Detail information of GWHGAAZE005890


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009587677.10PREDICTED: uncharacterized protein LOC104085370 [Nicotiana tomentosiformis]
trEMBLtr|A0A072VLP9|A0A072VLP9_MEDTR0Hop-interacting protein THI002 {ECO:0000313|EMBL:KEH42904.1}
TAIR10AT5G41950.10Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1576456715771581-
GWHAAZE00000002mRNA1576456715771581-
GWHAAZE00000002exon1577127715771581-
GWHAAZE00000002exon1577045815770592-
GWHAAZE00000002exon1577009615770165-
GWHAAZE00000002exon1576971515769828-
GWHAAZE00000002exon1576900315769086-
GWHAAZE00000002exon1576845715768507-
GWHAAZE00000002exon1576828315768312-
GWHAAZE00000002exon1576806015768122-
GWHAAZE00000002exon1576756915767634-
GWHAAZE00000002exon1576734415767472-
GWHAAZE00000002exon1576691115766946-
GWHAAZE00000002exon1576579215765911-
GWHAAZE00000002exon1576524915765437-
GWHAAZE00000002exon1576456715764677-
GWHAAZE00000002CDS1577127715771581-
GWHAAZE00000002CDS1577045815770592-
GWHAAZE00000002CDS1577009615770165-
GWHAAZE00000002CDS1576971515769828-
GWHAAZE00000002CDS1576900315769086-
GWHAAZE00000002CDS1576845715768507-
GWHAAZE00000002CDS1576828315768312-
GWHAAZE00000002CDS1576806015768122-
GWHAAZE00000002CDS1576756915767634-
GWHAAZE00000002CDS1576734415767472-
GWHAAZE00000002CDS1576691115766946-
GWHAAZE00000002CDS1576579215765911-
GWHAAZE00000002CDS1576524915765437-
GWHAAZE00000002CDS1576456715764677-
Transcript Sequence

Network for GWHGAAZE005890

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0173


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06552.13TOM20_plant2343561.90E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.912
SRR3591706second leaf14.879
SRR3591707mature leaf15.101
SRR3591708Shoot apex22.929
SRR3591709Stem21.654
SRR3591710White floral bud25.692
SRR3591711White flower25.844
SRR3591712Green floral bud35.712
SRR3591713Yellow flower23.027
SRP173429 SRR8316895Juvenile bud stage 22.993
SRR8316896Juvenile bud stage 36.037
SRR8316897Juvenile bud stage 15.801
SRR8316894Third green stage 15.347
SRR8316900Third green stage 46.351
SRR8316901Third green stage 46.131
SRR8316898Complete white stage 21.484
SRR8316899Complete white stage 54.151
SRR8316903Complete white stage 27.402
SRR8316902Silver flowering stage13.957
SRR8316904Silver flowering stage19.944
SRR8316905Silver flowering stage9.501
SRR8316906Gold flowering stage 29.955
SRR8316907Gold flowering stage 25.337
SRR8316908Gold flowering stage 25.987
SRP132670SRR6706286Control42.321
SRR6706287Light intensity 50%43.945
SRR6706288Light intensity 20%47.192
CNP0000432CNS0095592Slightly white alabastrum(diploid) 129.767
CNS0095593Slightly white alabastrum(diploid) 224.322
CNS0095594Slightly white alabastrum(diploid) 329.090
CNS0095595Whole white alabastrum(diploid) 223.104
CNS0095596Whole white alabastrum(diploid) 325.500
CNS0095597Whole white alabastrum(diploid) 425.693
CNS0095598Silvery flower (diploied) 119.087
CNS0095599Silvery flower (diploied) 219.028
CNS0095600Silvery flower (diploied) 329.136
CNS0095601Golden flower (diploid) 115.575
CNS0095602Golden flower (diploid) 223.455
CNS0095603Golden flower (diploid) 323.925
CNS0095604Slightly white alabastrum(tetraploid) 137.803
CNS0095605Slightly white alabastrum(tetraploid) 228.685
CNS0095606Slightly white alabastrum(tetraploid) 337.028
CNS0095607Whole white alabastrum(tetraploid) 125.066
CNS0095608Whole white alabastrum(tetraploid) 223.367
CNS0095609Whole white alabastrum(tetraploid) 343.667
CNS0095610Silvery flower (tetraploid) 139.324
CNS0095611Silvery flower (tetraploid) 231.118
CNS0095612Silvery flower (tetraploid) 334.502
CNS0095613Golden flower (tetraploid) 120.531
CNS0095614Golden flower (tetraploid) 228.872
CNS0095615Golden flower (tetraploid) 318.908
CRA001975CRR073297Stem 140.017
CRR073298Stem 234.930
CRR073299Stem 330.621
CRR073300Leaf 147.441
CRR073301Leaf 245.789
CRR073302Leaf 342.861
CRR073303Juvenile bud 149.236
CRR073304Juvenile bud 250.195
CRR073305Juvenile bud 341.665
CRR073306Third green 116.609
CRR073307Third green 217.315
CRR073308Third green 319.391
CRR073309Second white 118.619
CRR073310Second white 225.473
CRR073311Second white 320.235
CRR073312Silver flowering 112.442
CRR073313Silver flowering 211.062
CRR073314Silver flowering 312.595
CRR073315Gold flowering 114.567
CRR073316Gold flowering 219.127
CRR073317Gold flowering 310.388
CRR073318Tawny withering 121.001
CRR073319Tawny withering 220.152
CRR073320Tawny withering 320.541