Gene detail

Detail information of GWHGAAZE005905

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002262703.1	5.58082E-76	PREDICTED: dof zinc finger protein DOF4.6 [Vitis vinifera]
Swissprot	tr\|Q43385\|DOF37_ARATH	1E-45	Dof zinc finger protein DOF3.7
trEMBL	tr\|F6HU58\|F6HU58_VITVI	2E-76	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58281.1}
TAIR10	AT3G61850.3	2E-32	Dof-type zinc finger DNA-binding family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	15943228	15943896	-
GWHAAZE00000002	mRNA	15943228	15943896	-
GWHAAZE00000002	exon	15943228	15943896	-
GWHAAZE00000002	CDS	15943228	15943896	-

Transcript Sequence
>GWHTAAZE005913 AACACAAAGTTTTGCTACTACAACAACTACAGCCTCACTCAGCCAAGATACTTTTGCAAGACTTGTAAAAGATACTGGACTGAAGGTGGGTCCCTCAGAAACATCCCTGTTGGTGGAGGATCAAGAAAGATCAACAAGAGACACCATTCTTCTTCATCATCTCCATCAAAAAAGTTTCCTCATTTAGTAGTATCATCTCCTCTTCAAAACCCTAAGATCACTACTAATGGGCCAAATGAGGCCCATGATCTGAATTTGGGCTTTAAGCCCACTAATGATTTCAAAACTTTCTCTGAATTCATGCAACTGCCTAATTTGCCCTGTTCTTCTTCTAGCCCTAATTCTGCACATCTCTCTGCTTTGGAGCTACTGAGTGGACTCACATCAAGGGGTTTAAATTCCTTCGTGCCAATGCAGATTAACGATCCGAATGCGGTTTACTCATCTGGGTTTCATAATTTGCCTGAATTTAAGTCTTCTTTGAGTTTTAATTTGGATGGGGTTGGGGGCTATGGGGATCAAGAGAGTACTAGTGGGAGGCTCTTGTTTCCATTTGAAGATTTGAAAGTACAACCCTCAAGCACAACAAATGAAGTTGAGCACAGTAATAGAGAGAATGGAGATTCTAGTGGGTACTGGAATGGGATGTTAGGTGGAGGATCATGGTAA

Network for GWHGAAZE005905

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02701.16	zf-Dof	1	46	8.90E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.164
	SRR3591706	second leaf	12.665
	SRR3591707	mature leaf	4.649
	SRR3591708	Shoot apex	19.997
	SRR3591709	Stem	23.464
	SRR3591710	White floral bud	20.264
	SRR3591711	White flower	15.008
	SRR3591712	Green floral bud	21.999
	SRR3591713	Yellow flower	3.480
SRP173429	SRR8316895	Juvenile bud stage	4.337
	SRR8316896	Juvenile bud stage	3.521
	SRR8316897	Juvenile bud stage	2.079
	SRR8316894	Third green stage	5.181
	SRR8316900	Third green stage	11.393
	SRR8316901	Third green stage	10.904
	SRR8316898	Complete white stage	6.077
	SRR8316899	Complete white stage	23.407
	SRR8316903	Complete white stage	8.227
	SRR8316902	Silver flowering stage	1.992
	SRR8316904	Silver flowering stage	4.309
	SRR8316905	Silver flowering stage	0.852
	SRR8316906	Gold flowering stage	1.575
	SRR8316907	Gold flowering stage	1.099
	SRR8316908	Gold flowering stage	2.648
SRP132670	SRR6706286	Control	2.042
	SRR6706287	Light intensity 50%	4.460
	SRR6706288	Light intensity 20%	4.119
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.862
	CNS0095593	Slightly white alabastrum(diploid) 2	6.641
	CNS0095594	Slightly white alabastrum(diploid) 3	2.289
	CNS0095595	Whole white alabastrum(diploid) 2	3.919
	CNS0095596	Whole white alabastrum(diploid) 3	5.969
	CNS0095597	Whole white alabastrum(diploid) 4	3.629
	CNS0095598	Silvery flower (diploied) 1	2.304
	CNS0095599	Silvery flower (diploied) 2	3.130
	CNS0095600	Silvery flower (diploied) 3	4.276
	CNS0095601	Golden flower (diploid) 1	2.613
	CNS0095602	Golden flower (diploid) 2	3.376
	CNS0095603	Golden flower (diploid) 3	3.203
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.233
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.223
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.489
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.866
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.687
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.426
	CNS0095610	Silvery flower (tetraploid) 1	5.977
	CNS0095611	Silvery flower (tetraploid) 2	4.271
	CNS0095612	Silvery flower (tetraploid) 3	5.479
	CNS0095613	Golden flower (tetraploid) 1	1.015
	CNS0095614	Golden flower (tetraploid) 2	8.868
	CNS0095615	Golden flower (tetraploid) 3	2.227
CRA001975	CRR073297	Stem 1	6.008
	CRR073298	Stem 2	7.513
	CRR073299	Stem 3	8.152
	CRR073300	Leaf 1	9.195
	CRR073301	Leaf 2	7.313
	CRR073302	Leaf 3	8.983
	CRR073303	Juvenile bud 1	10.790
	CRR073304	Juvenile bud 2	10.886
	CRR073305	Juvenile bud 3	14.493
	CRR073306	Third green 1	2.047
	CRR073307	Third green 2	2.903
	CRR073308	Third green 3	2.199
	CRR073309	Second white 1	0.149
	CRR073310	Second white 2	0.190
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.177
	CRR073313	Silver flowering 2	0.731
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.182
	CRR073316	Gold flowering 2	1.759
	CRR073317	Gold flowering 3	1.159
	CRR073318	Tawny withering 1	3.131
	CRR073319	Tawny withering 2	3.139
	CRR073320	Tawny withering 3	4.110