Gene detail

Detail information of GWHGAAZE005907

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010252819.1	4.05015E-65	PREDICTED: myb-related protein 308-like [Nelumbo nucifera]
Swissprot	tr\|Q9S9K9\|MYB3_ARATH	9E-51	Transcription factor MYB3
trEMBL	tr\|A4F4L3\|A4F4L3_VITVI	5E-64	MYBPA1 protein {ECO:0000313\|EMBL:CAJ90831.1}
TAIR10	AT5G49330.1	8E-44	myb domain protein 111

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	15972964	15974814	+
GWHAAZE00000002	mRNA	15972964	15974814	+
GWHAAZE00000002	exon	15972964	15973130	+
GWHAAZE00000002	exon	15974199	15974814	+
GWHAAZE00000002	CDS	15972964	15973130	+
GWHAAZE00000002	CDS	15974199	15974814	+

Transcript Sequence
>GWHTAAZE005915 ATGGGGAGAGCACCATGTTGTTCCAAGGTGGGTTTGCATAGAGGTGCATGGTCTCTTAAAGAAGACAAACTCCTCACTCAATATATTCAATCCCACGGCGAAGGCCATTGGAAATCTTTGCCTTCCAACGCAGGTACCCCTTTACTTCTTACTACACGCATGCATACATGTGGAAAAAGCTGTAGACTAAGATGGAAAAACTATCTCCAACCGGGAATCAAGAGAGGAAACATCACAACCGAGGAAGAAGACCTCATTATCCGTCTTCATTCTCTTCTTGGTAACCGTTGGTCTATCATAGCCCGCAAACTCCCAGGTCGAACCGACAATGACGTTAAGAACCATTGGAATACCCATCTCCGCAAAAGAGTACTCAAAGACACACCAATTGATCAACCAGATACTTCTGAAAACCCCGAGGGCAAAAACAAGAATAAGAAGAAGGGCACGGTAATAATTTCCAACGAAGACGTTACCGAGTCAAATAAAACCTCAGAGAGCAACAGTTCTCATGGGTCTTCTAGTACTAATGGAGGAGTCGAACTTCAAAGTATCACTATAAAAGCTTCGAATCATCCATGGCCTTTCTTTGAAGATTATGATGAAGAAGATGTACTTCAAGATGTTCTGATGAACAGGAGCGGCTGTGATCTTTCAGTGAAGTACTGGTCAGTGTTTACAGATGATAACAAGCTAGAGAAGCTCTATGATGAGTATCTGCAGCTTCTTAATTGGGAAGAACATGTAAATCCACCCATCAGATCTCATTTTCCTAACATTTAA

Network for GWHGAAZE005907

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	69	2.80E-10
PF00249.32	Myb_DNA-binding	75	120	1.90E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.450
	SRR3591706	second leaf	19.125
	SRR3591707	mature leaf	32.149
	SRR3591708	Shoot apex	2.176
	SRR3591709	Stem	1.012
	SRR3591710	White floral bud	0.968
	SRR3591711	White flower	1.331
	SRR3591712	Green floral bud	2.180
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	4.922
	SRR8316896	Juvenile bud stage	8.018
	SRR8316897	Juvenile bud stage	4.200
	SRR8316894	Third green stage	3.086
	SRR8316900	Third green stage	15.623
	SRR8316901	Third green stage	21.970
	SRR8316898	Complete white stage	2.788
	SRR8316899	Complete white stage	15.259
	SRR8316903	Complete white stage	3.669
	SRR8316902	Silver flowering stage	0.599
	SRR8316904	Silver flowering stage	1.098
	SRR8316905	Silver flowering stage	0.772
	SRR8316906	Gold flowering stage	2.069
	SRR8316907	Gold flowering stage	0.118
	SRR8316908	Gold flowering stage	1.894
SRP132670	SRR6706286	Control	8.155
	SRR6706287	Light intensity 50%	7.886
	SRR6706288	Light intensity 20%	8.330
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.057
	CNS0095593	Slightly white alabastrum(diploid) 2	2.273
	CNS0095594	Slightly white alabastrum(diploid) 3	5.154
	CNS0095595	Whole white alabastrum(diploid) 2	3.537
	CNS0095596	Whole white alabastrum(diploid) 3	2.443
	CNS0095597	Whole white alabastrum(diploid) 4	6.854
	CNS0095598	Silvery flower (diploied) 1	6.015
	CNS0095599	Silvery flower (diploied) 2	3.458
	CNS0095600	Silvery flower (diploied) 3	4.411
	CNS0095601	Golden flower (diploid) 1	4.259
	CNS0095602	Golden flower (diploid) 2	4.678
	CNS0095603	Golden flower (diploid) 3	6.392
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.122
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.441
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.045
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.731
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.888
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.331
	CNS0095610	Silvery flower (tetraploid) 1	11.059
	CNS0095611	Silvery flower (tetraploid) 2	8.862
	CNS0095612	Silvery flower (tetraploid) 3	0.265
	CNS0095613	Golden flower (tetraploid) 1	3.231
	CNS0095614	Golden flower (tetraploid) 2	6.585
	CNS0095615	Golden flower (tetraploid) 3	0.375
CRA001975	CRR073297	Stem 1	4.528
	CRR073298	Stem 2	6.406
	CRR073299	Stem 3	3.634
	CRR073300	Leaf 1	5.219
	CRR073301	Leaf 2	9.011
	CRR073302	Leaf 3	3.899
	CRR073303	Juvenile bud 1	4.730
	CRR073304	Juvenile bud 2	1.871
	CRR073305	Juvenile bud 3	4.947
	CRR073306	Third green 1	0.154
	CRR073307	Third green 2	0.065
	CRR073308	Third green 3	0.191
	CRR073309	Second white 1	0.152
	CRR073310	Second white 2	0.157
	CRR073311	Second white 3	0.050
	CRR073312	Silver flowering 1	0.046
	CRR073313	Silver flowering 2	0.433
	CRR073314	Silver flowering 3	0.504
	CRR073315	Gold flowering 1	0.523
	CRR073316	Gold flowering 2	0.357
	CRR073317	Gold flowering 3	0.530
	CRR073318	Tawny withering 1	0.109
	CRR073319	Tawny withering 2	0.026
	CRR073320	Tawny withering 3	0.054