Detail information of GWHGAAZE005909


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007040629.10NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]
Swissprottr|Q6RVV4|TIC32_PEA3E-82Short-chain dehydrogenase TIC 32, chloroplastic
trEMBLtr|A0A061G5K7|A0A061G5K7_THECC0NAD(P)-binding Rossmann-fold superfamily protein {ECO:0000313|EMBL:EOY25130.1}
TAIR10AT4G24050.12E-128NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1600442216007230-
GWHAAZE00000002mRNA1600442216007230-
GWHAAZE00000002exon1600691516007230-
GWHAAZE00000002exon1600654116006772-
GWHAAZE00000002exon1600635416006433-
GWHAAZE00000002exon1600605816006214-
GWHAAZE00000002exon1600583416005915-
GWHAAZE00000002exon1600559516005682-
GWHAAZE00000002exon1600544516005491-
GWHAAZE00000002exon1600442216004622-
GWHAAZE00000002five_prime_UTR1600703916007230-
GWHAAZE00000002CDS1600691516007038-
GWHAAZE00000002CDS1600654116006772-
GWHAAZE00000002CDS1600635416006433-
GWHAAZE00000002CDS1600605816006214-
GWHAAZE00000002CDS1600583416005915-
GWHAAZE00000002CDS1600559516005682-
GWHAAZE00000002CDS1600544516005491-
GWHAAZE00000002CDS1600442216004622-
Transcript Sequence

Network for GWHGAAZE005909

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00106.26adh_short371771.10E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11153RDH12 Metabolic pathways map01100
Retinol metabolismmap00830

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.785
SRR3591706second leaf16.659
SRR3591707mature leaf19.227
SRR3591708Shoot apex12.516
SRR3591709Stem8.872
SRR3591710White floral bud36.097
SRR3591711White flower28.232
SRR3591712Green floral bud17.251
SRR3591713Yellow flower6.343
SRP173429 SRR8316895Juvenile bud stage 13.997
SRR8316896Juvenile bud stage 18.480
SRR8316897Juvenile bud stage 9.808
SRR8316894Third green stage 7.894
SRR8316900Third green stage 22.919
SRR8316901Third green stage 19.985
SRR8316898Complete white stage 14.152
SRR8316899Complete white stage 34.065
SRR8316903Complete white stage 18.799
SRR8316902Silver flowering stage10.549
SRR8316904Silver flowering stage16.601
SRR8316905Silver flowering stage7.752
SRR8316906Gold flowering stage 8.296
SRR8316907Gold flowering stage 25.288
SRR8316908Gold flowering stage 14.538
SRP132670SRR6706286Control21.006
SRR6706287Light intensity 50%20.468
SRR6706288Light intensity 20%20.987
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.023
CNS0095593Slightly white alabastrum(diploid) 29.242
CNS0095594Slightly white alabastrum(diploid) 39.083
CNS0095595Whole white alabastrum(diploid) 210.365
CNS0095596Whole white alabastrum(diploid) 313.011
CNS0095597Whole white alabastrum(diploid) 411.366
CNS0095598Silvery flower (diploied) 18.703
CNS0095599Silvery flower (diploied) 26.558
CNS0095600Silvery flower (diploied) 318.313
CNS0095601Golden flower (diploid) 14.546
CNS0095602Golden flower (diploid) 28.958
CNS0095603Golden flower (diploid) 38.167
CNS0095604Slightly white alabastrum(tetraploid) 112.660
CNS0095605Slightly white alabastrum(tetraploid) 212.242
CNS0095606Slightly white alabastrum(tetraploid) 320.909
CNS0095607Whole white alabastrum(tetraploid) 110.569
CNS0095608Whole white alabastrum(tetraploid) 210.106
CNS0095609Whole white alabastrum(tetraploid) 324.630
CNS0095610Silvery flower (tetraploid) 128.934
CNS0095611Silvery flower (tetraploid) 230.031
CNS0095612Silvery flower (tetraploid) 311.012
CNS0095613Golden flower (tetraploid) 16.373
CNS0095614Golden flower (tetraploid) 29.745
CNS0095615Golden flower (tetraploid) 31.824
CRA001975CRR073297Stem 137.105
CRR073298Stem 231.513
CRR073299Stem 341.765
CRR073300Leaf 134.672
CRR073301Leaf 227.634
CRR073302Leaf 327.533
CRR073303Juvenile bud 142.383
CRR073304Juvenile bud 231.043
CRR073305Juvenile bud 333.666
CRR073306Third green 152.615
CRR073307Third green 256.775
CRR073308Third green 356.532
CRR073309Second white 19.294
CRR073310Second white 211.786
CRR073311Second white 34.747
CRR073312Silver flowering 10.972
CRR073313Silver flowering 20.339
CRR073314Silver flowering 30.838
CRR073315Gold flowering 136.873
CRR073316Gold flowering 247.909
CRR073317Gold flowering 329.679
CRR073318Tawny withering 16.376
CRR073319Tawny withering 22.582
CRR073320Tawny withering 38.718