Gene detail

Detail information of GWHGAAZE005916

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12182.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|P52410\|KASC1_ARATH	0	3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic (Precursor)
trEMBL	tr\|A0A068UV90\|A0A068UV90_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_62 {ECO:0000313\|EMBL:CDP12182.1}
TAIR10	AT5G46290.1	6E-166	3-ketoacyl-acyl carrier protein synthase I

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	16181910	16188458	+
GWHAAZE00000002	mRNA	16181910	16188458	+
GWHAAZE00000002	exon	16181910	16182087	+
GWHAAZE00000002	exon	16184586	16184944	+
GWHAAZE00000002	exon	16185772	16185913	+
GWHAAZE00000002	exon	16186005	16186201	+
GWHAAZE00000002	exon	16186576	16186749	+
GWHAAZE00000002	exon	16187097	16187168	+
GWHAAZE00000002	exon	16187403	16187540	+
GWHAAZE00000002	exon	16187646	16187712	+
GWHAAZE00000002	exon	16188129	16188458	+
GWHAAZE00000002	five_prime_UTR	16181910	16181918	+
GWHAAZE00000002	CDS	16181919	16182087	+
GWHAAZE00000002	CDS	16184586	16184944	+
GWHAAZE00000002	CDS	16185772	16185913	+
GWHAAZE00000002	CDS	16186005	16186201	+
GWHAAZE00000002	CDS	16186576	16186749	+
GWHAAZE00000002	CDS	16187097	16187168	+
GWHAAZE00000002	CDS	16187403	16187540	+
GWHAAZE00000002	CDS	16187646	16187712	+
GWHAAZE00000002	CDS	16188129	16188196	+
GWHAAZE00000002	three_prime_UTR	16188197	16188458	+

Transcript Sequence
>GWHTAAZE005924 TTGGGAAAGATGGCAGGCATTGCTGCAACTTGTTCTTCTTCTGGTTTGATCTTTAAGACTAAAAAATCAGCAAATAATGCTACTATTCTGCTTCAATTTAATGGACTAAGAGCTATTGAGACTAAGCAATTGGTGGGTTCGTCTGGTTTTAACCTAAATGGTTTCCTTTCTACTTCAGCCGCAAAATGCAGAAGAATCAAGGCCATGGCTTCACCAACAGTTTCAGCTCCCAAGCGAGAAACGGACCCCAAAAAGAGAGTAGTCATAACGGGAATGGGCCTTGTGTCGGTCTTTGGCAACGATGTTGACACTTTCTATAACAAGCTTCTCGAGGGAGAGAGTGGGGTCACCCAAATCGATAGGTTTGATGCTTCCACCTACTCTGTTAGGTTCGCAGGTCAGATTCGCAATTTCTCCTCGAAAGGCTACATTGATGGTAAGAATGATAGGCGTCTGGATGATTGCTGGAGGTACTGTTTGGTTGCTGGTAGAAAGGCTCTTGATGATGCCACCCTAGAGCCTCAAGTCCTGGAAACTATGGACAGATCAAGAATTGGAGTCTTGGTGGGGTCAGGCATGGGAGGCTTAACAGCTTTCAGCAATGGAGTGGAAGCTCTAATTCAAAAAGGATATAAGAAAATCACTCCATTTTTCATTCCTTACTCAATCACCAACATGGCTGCCAATCACATTAGAAGGGGCGAAGCGGATATAATGGTAGCTGGCGGGACAGAGGCTGCAGTTAATGCCACTGGGGTTGGTGGCTTTATTGCTTGCCGGGCTTTGTCTCAAAGAAATGATGAACCCCATAAGGCCTCGAGGCCGTGGGACAAAGACCGTGATGGTTTTGTTATCGGAGAAGGTGCCGGTGTATTGATAATGGAAAGCTTAGAGCATGCCACAAAAAGAGGGGCTAATATTATTGCAGAGTACCTTGGAGGCGCCATAACTTGCGATGCTCATCACATGACTGATCCTCGATCGGATGGCCTTGGAGTATCATCTTGTATAACCAAGAGCTTAGAAGATGCCGGAGTTTCCCCCGAAGAGGTGAATTATGTGAATGCTCATGCAACATCAACCCTTGCGGGGGATTTGGCTGAGTTCAATGCCATAAAGAAGCTAACTAATTTTGAGTTTTGTCCTTTGCTGTTTCAGTCTATGATTGGACACGGCCTTGGGGCTGCTGGTGGATTGGAAGCCATTGCATCCATAAAGGCTATCACCACTGGATGGTTACATCCAACAATTAACCAATACAACTTGGAGCCCGCTGTTACAATTGATACTGTACCAAATGTGAAGAAAAAGCATGAAGTTAATGTTGCTATTTCAAACTCGTTCGGATTTGGCGGGCATAATTCAGTGGTGGTTTTTGCTCCCTTCAAGCCTTAAAACAGAGCTTTAATTGAGAAGGCGGCTAGTTTCTTTCTTGTCTCTCATAACTTGCAGAAATATTTTGATTTTGCGACATTCAAGCTTTTACACCATAATTGAAAGATTTTACCGGTATTGGAATCATGTGTGCTGTGAGGGACGTGGGTAACAATGTTCTTTCTTTCTCCATTTTATGTGTTTGTATGAGATCAGATTATGGGTTATTGAGATCAATAAAATGTATTAAGACATCTTACATTAATCAATCTTGTTCTTGGCT

Network for GWHGAAZE005916

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00109.27	ketoacyl-synt	82	228	2.00E-21
PF02801.23	Ketoacyl-synt_C	306	415	7.10E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09458	fabF, OXSM, CEM1	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biotin metabolism	map00780

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.332
	SRR3591706	second leaf	43.864
	SRR3591707	mature leaf	1.182
	SRR3591708	Shoot apex	33.087
	SRR3591709	Stem	0.517
	SRR3591710	White floral bud	1.605
	SRR3591711	White flower	2.430
	SRR3591712	Green floral bud	4.767
	SRR3591713	Yellow flower	2.086
SRP173429	SRR8316895	Juvenile bud stage	18.392
	SRR8316896	Juvenile bud stage	26.706
	SRR8316897	Juvenile bud stage	7.490
	SRR8316894	Third green stage	6.457
	SRR8316900	Third green stage	14.682
	SRR8316901	Third green stage	17.683
	SRR8316898	Complete white stage	4.820
	SRR8316899	Complete white stage	9.716
	SRR8316903	Complete white stage	7.610
	SRR8316902	Silver flowering stage	8.104
	SRR8316904	Silver flowering stage	9.721
	SRR8316905	Silver flowering stage	4.788
	SRR8316906	Gold flowering stage	14.052
	SRR8316907	Gold flowering stage	14.311
	SRR8316908	Gold flowering stage	8.939
SRP132670	SRR6706286	Control	19.979
	SRR6706287	Light intensity 50%	19.694
	SRR6706288	Light intensity 20%	22.354
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.731
	CNS0095593	Slightly white alabastrum(diploid) 2	8.624
	CNS0095594	Slightly white alabastrum(diploid) 3	8.662
	CNS0095595	Whole white alabastrum(diploid) 2	7.856
	CNS0095596	Whole white alabastrum(diploid) 3	7.911
	CNS0095597	Whole white alabastrum(diploid) 4	6.557
	CNS0095598	Silvery flower (diploied) 1	5.390
	CNS0095599	Silvery flower (diploied) 2	5.170
	CNS0095600	Silvery flower (diploied) 3	15.314
	CNS0095601	Golden flower (diploid) 1	5.046
	CNS0095602	Golden flower (diploid) 2	7.532
	CNS0095603	Golden flower (diploid) 3	8.461
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.896
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.429
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.305
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.140
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.933
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.461
	CNS0095610	Silvery flower (tetraploid) 1	21.279
	CNS0095611	Silvery flower (tetraploid) 2	18.070
	CNS0095612	Silvery flower (tetraploid) 3	40.673
	CNS0095613	Golden flower (tetraploid) 1	15.465
	CNS0095614	Golden flower (tetraploid) 2	20.063
	CNS0095615	Golden flower (tetraploid) 3	25.934
CRA001975	CRR073297	Stem 1	23.881
	CRR073298	Stem 2	22.536
	CRR073299	Stem 3	25.434
	CRR073300	Leaf 1	18.735
	CRR073301	Leaf 2	17.376
	CRR073302	Leaf 3	21.027
	CRR073303	Juvenile bud 1	11.155
	CRR073304	Juvenile bud 2	10.997
	CRR073305	Juvenile bud 3	9.121
	CRR073306	Third green 1	22.650
	CRR073307	Third green 2	9.745
	CRR073308	Third green 3	15.525
	CRR073309	Second white 1	10.357
	CRR073310	Second white 2	11.726
	CRR073311	Second white 3	12.500
	CRR073312	Silver flowering 1	10.640
	CRR073313	Silver flowering 2	9.060
	CRR073314	Silver flowering 3	11.757
	CRR073315	Gold flowering 1	2.390
	CRR073316	Gold flowering 2	4.024
	CRR073317	Gold flowering 3	3.334
	CRR073318	Tawny withering 1	6.695
	CRR073319	Tawny withering 2	1.398
	CRR073320	Tawny withering 3	7.028