Gene detail

Detail information of GWHGAAZE005919

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099903.1	0	PREDICTED: LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Sesamum indicum]
trEMBL	tr\|A0A068VAQ9\|A0A068VAQ9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_181 {ECO:0000313\|EMBL:CDP17811.1}
TAIR10	AT1G20960.2	1E-154	U5 small nuclear ribonucleoprotein helicase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	16205325	16206404	+
GWHAAZE00000002	mRNA	16205325	16206404	+
GWHAAZE00000002	exon	16205325	16206404	+
GWHAAZE00000002	CDS	16205325	16206404	+

Transcript Sequence
>GWHTAAZE005927 ATGGGGTTGGGAAATTTGCATGAAGGTTTGAGTACAACAGATCAGGATATTGTGAGAACGCTTTTCGAAACTGGCTGGATTCAAGTATGTGTAATGAGCAGTTCAATATGTTGGGGCACTTCCCTTCACGCGCACTTGGTGGTTGTGATGGGAACACAGTTCTATGATGGGCTTGAAAATGCGCACACTGATTACCCCATCACTGATCTTTTGCAGATGATGGGTCATGCTAGTTGGCCTCTTGTGGATAACTCTGGCAAGTGTGTTATCTTTTGCCACGCACCGCGTAAAGAATATTGTAAGAAGTTTTTGTACGAAGCACTCCCAGTCGAAAGCCATTTGCACCACTTCCTGCATGATAATTTAAATGTGGAGGTTGTTGTTGGAGTCATCACAAGCAAGCAAGACGCTGTGGATTATCTCAAATGGACATTCATGTACAGGAGGCTCACGCAGAATCTGAACTACTACAATCATCTTCAGGGTATTAGTCAGAGGCATCTCTCTGATCACCTATCGGAGCTTGTCGAGAACACACTAAGTGATTTGGAAGCAAGTAAACGTGTTGCTATAGAGGAAGATATTTATCTCTCTCCTTTGAACCTTGGCATGATAGCATCATATTACTATATCAGTTACACAGCCATAGAACGTTTCAGTTCTTCTTTGACCTCCAAAACAAAGTTGAAGGGTCTTCTGGAGATTCTGGCTTCAGCTTCAGAGTATGAATTTCTTCCAATACGCCCAGGGGAAGAAGAGTTGATAAGAAGGTTGATCAATAACCGGCGGTTCTCCTTTGAGAATCCCAAATGCACAGACCCACATGTTAAAGCAAATGTACTACTACAAACCCACTTCTCAAGGCAGTTGTTGGGTGCGAATTTAGCCTCTGACCAGCAAGAGGTTCTCCTTTCTGCCAGTAGGTTTCTTCATGCAATGGTTGATGTTATTTCCAGCAATGGGCGGCTAAGCTTGGCACTTCTTACTATGGAAGTGAGCCAGATGGTGACCCAGGGTATGTGGAAGCGTGACTCCATGCTTCTACAGCTTCCACACTTCACAAAGGATCGATCTGGCTAA

Network for GWHGAAZE005919

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02889.17	Sec63	199	352	4.10E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12854	SNRNP200, BRR2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.060
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.139
	SRR8316897	Juvenile bud stage	0.096
	SRR8316894	Third green stage	0.031
	SRR8316900	Third green stage	0.267
	SRR8316901	Third green stage	0.405
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.134
	SRR8316902	Silver flowering stage	0.236
	SRR8316904	Silver flowering stage	0.122
	SRR8316905	Silver flowering stage	0.093
	SRR8316906	Gold flowering stage	0.184
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.168
	SRR6706287	Light intensity 50%	0.190
	SRR6706288	Light intensity 20%	0.122
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.112
	CNS0095593	Slightly white alabastrum(diploid) 2	0.116
	CNS0095594	Slightly white alabastrum(diploid) 3	0.470
	CNS0095595	Whole white alabastrum(diploid) 2	0.153
	CNS0095596	Whole white alabastrum(diploid) 3	0.445
	CNS0095597	Whole white alabastrum(diploid) 4	0.490
	CNS0095598	Silvery flower (diploied) 1	0.531
	CNS0095599	Silvery flower (diploied) 2	0.116
	CNS0095600	Silvery flower (diploied) 3	0.112
	CNS0095601	Golden flower (diploid) 1	0.085
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.047
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.476
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.034
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.110
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.165
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.047
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.072
	CNS0095612	Silvery flower (tetraploid) 3	0.096
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.047
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.103
	CRR073298	Stem 2	0.110
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.391
	CRR073301	Leaf 2	0.099
	CRR073302	Leaf 3	0.226
	CRR073303	Juvenile bud 1	0.040
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.230
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.080
	CRR073320	Tawny withering 3	0.000