Gene detail

Detail information of GWHGAAZE005921

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP25269.1	hypothetical protein JCGZ_20425 [Jatropha curcas]
Swissprot	tr\|Q9XED8\|ARFI_ARATH	Auxin response factor 9
trEMBL	tr\|D7TVI5\|D7TVI5_VITVI	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT4G23980.2	auxin response factor 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	16233776	16237412	+
GWHAAZE00000002	mRNA	16233776	16237412	+
GWHAAZE00000002	exon	16233776	16233928	+
GWHAAZE00000002	exon	16234104	16234199	+
GWHAAZE00000002	exon	16234397	16234453	+
GWHAAZE00000002	exon	16234580	16234732	+
GWHAAZE00000002	exon	16234839	16234923	+
GWHAAZE00000002	exon	16235104	16235194	+
GWHAAZE00000002	exon	16235333	16235497	+
GWHAAZE00000002	exon	16235606	16235719	+
GWHAAZE00000002	exon	16235797	16235869	+
GWHAAZE00000002	exon	16235975	16236604	+
GWHAAZE00000002	exon	16236738	16236925	+
GWHAAZE00000002	exon	16237274	16237412	+
GWHAAZE00000002	CDS	16233776	16233928	+
GWHAAZE00000002	CDS	16234104	16234199	+
GWHAAZE00000002	CDS	16234397	16234453	+
GWHAAZE00000002	CDS	16234580	16234732	+
GWHAAZE00000002	CDS	16234839	16234923	+
GWHAAZE00000002	CDS	16235104	16235194	+
GWHAAZE00000002	CDS	16235333	16235497	+
GWHAAZE00000002	CDS	16235606	16235719	+
GWHAAZE00000002	CDS	16235797	16235869	+
GWHAAZE00000002	CDS	16235975	16236604	+
GWHAAZE00000002	CDS	16236738	16236925	+
GWHAAZE00000002	CDS	16237274	16237412	+

Transcript Sequence
>GWHTAAZE005929 ATTTTGTGTGTGTGTGTGTTTGGTTTGGAAAATTTAGGGCATGGAGGTGAAGATCTGTTTACGGAGCTATGGAAGGCATGTGCTGGTCCACTTGTGGATGTTCCACGGAATGGAGAGAGAGTTTTCTATTTTCCTCAAGGTCATATGGAGCAATTAGAGGCATCGACAAATCAAGAACTGAATCAGAGAATTCCTCACTTCAATCTTCCATCGAAGATATTATGTCGTGTTGTTCACATTCAGCTGCTGGCTGAACAAGAAACTGATGAAGTTTATGCGCAAATTACTTTACAGCCAGAAGCAGATCAAACTGAGCCAAGAAGCCCTGATTCGTGTCCCCTTGATCCTACAAGGCCGTCTGCTCACTCGTTTTGCAAGGTCTTAACTGCCTCCGATACAAGTACTCATGGCGGGTTTTCTGTTCTTAGGAAACATGCTAACGAATGCCTCCCTCCCCTGGACATGACCCAGGCCACTCCGACCCAGGAATTGGCAGCCAAGGATCTTCATGGTATTGAATGGCGATTTAAGCATATCTTTAGAGGCCAACCCCGGAGGCATTTGCTTACAACAGGTTGGAGCACATTTGTTACTTCTAAGAGATTAGTTGCTGGGGATTCTTTTGTATTCCTGAGGGGTGAGAATAGGGAACTTCGAGTAGGTGTGAGACGTGCTGCTCGTCAACAAAGCTCCATGCCGTCCTCGGTGATTTCAAGCCAGAGCATGCACCTAGGAGTGCTTGCAACTGCATCTCACGCTATTGCAACCCAAACCCTCTTTGTTGTTTACTACAAGCCAAGGACGAGTCAATTCATCATTGGCTTGAACAAATATCTAGAAGCTGTGAACGCTGGGTTTGGAGTTGGAATGAGATTCAAGATGCGGTTTGAGGGGGAGGATTCTCCTGAGAGAAGGTTTACAGGCACAATAGTCGGGGTTGAAGATATTTCACCCCAGTGGGAAGCTTCTAGGTGGCGATCATTGAAGGTTCAGTGGGATGAACCAGCATCTGTTTCAAGGCCTGAAAGGGTGTCTGTATGGGAGATTGAACCTTTTGTAGCTTCTGTTCCTACAAGCCTGGTTCAACCAGTGGCAGTGAAGAGTAAAAGGTTAAGGCCAGCAATTGAAATCCCAGCTTCTTCAGCCGCATCAGTTGTCTGGAATCCCCACGATTCATCCCAATTAAGCGGTATCCCTGAAGAACACAGGAGTGAAAATCCTATATCCTGGTTTTCTCCATCTGATGTGAAGGCTTCTCGCAATATGCTTTTTGATGAAAAAGAAGATAGTAAAAGTCCCTCGGTTTGGTCTGTTCTTCCAAGCTATTCAACGCAGCACTCAGCAATTCAGATGAACGAGATGCCAAATGGGAGGAAATCGGACATCGTTGCTAGTTGCAGATTGTTTGGTTTTGATTTGAAAGTTCCCTCAAATGGTGACAGCTCAGTCAATATAACCACCTATAGTACTGCTGTAGGACCTGTACCTAGTACACTCTCGGTTAGTGAATCAGAACAAAAGTCTGACCTTTCAAAGGATTCGAAAGAGGGGCTGTTGCAAGTATCAACAAAGGAGGCTCAAAGCAAGCACACTTGCTCTACCAGAAGCCGAACTAAGGTTCAAATGCAGGGGATTGCAGTGGGTCGTGCAGTGGACTTAACTGCACTAAAAGGTTACGATGAGCTTATAAGTGAACTAGAAGAGATGTTTGAAATCAAAGGAGAGCTTCGCCCTCGGAATCAATGGGAAATTGTCTTTACAGATGATGAAGGGGATATGATGCTTATGGGTGACGATCCATGGCCGGAATTCTGTGATATGGTAAGACGGATCTTCATTTGTTCAAGCCAGGATGTGAAGAAAATGAGTTCAGGAAACAAGCTTCCTAAATTGTCGGTGGATAGTGAAGGGTCTGCTTTCAGGCTGGATACTGCTGAAAGCTGA

Network for GWHGAAZE005921

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	124	225	1.60E-21
PF06507.14	Auxin_resp	250	329	3.60E-30
PF02309.17	AUX_IAA	513	571	5.80E-08
PF02309.17	AUX_IAA	581	619	5.40E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
K14486	K14486, ARF	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.159
	SRR3591706	second leaf	60.614
	SRR3591707	mature leaf	66.034
	SRR3591708	Shoot apex	116.018
	SRR3591709	Stem	42.580
	SRR3591710	White floral bud	3.766
	SRR3591711	White flower	10.961
	SRR3591712	Green floral bud	3.634
	SRR3591713	Yellow flower	4.204
SRP173429	SRR8316895	Juvenile bud stage	66.564
	SRR8316896	Juvenile bud stage	92.481
	SRR8316897	Juvenile bud stage	36.343
	SRR8316894	Third green stage	3.507
	SRR8316900	Third green stage	2.620
	SRR8316901	Third green stage	8.304
	SRR8316898	Complete white stage	0.041
	SRR8316899	Complete white stage	6.912
	SRR8316903	Complete white stage	0.641
	SRR8316902	Silver flowering stage	0.417
	SRR8316904	Silver flowering stage	0.673
	SRR8316905	Silver flowering stage	0.257
	SRR8316906	Gold flowering stage	0.940
	SRR8316907	Gold flowering stage	1.005
	SRR8316908	Gold flowering stage	1.042
SRP132670	SRR6706286	Control	2.525
	SRR6706287	Light intensity 50%	2.588
	SRR6706288	Light intensity 20%	2.606
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.808
	CNS0095593	Slightly white alabastrum(diploid) 2	7.498
	CNS0095594	Slightly white alabastrum(diploid) 3	11.848
	CNS0095595	Whole white alabastrum(diploid) 2	13.697
	CNS0095596	Whole white alabastrum(diploid) 3	1.095
	CNS0095597	Whole white alabastrum(diploid) 4	3.920
	CNS0095598	Silvery flower (diploied) 1	14.824
	CNS0095599	Silvery flower (diploied) 2	77.240
	CNS0095600	Silvery flower (diploied) 3	17.303
	CNS0095601	Golden flower (diploid) 1	27.537
	CNS0095602	Golden flower (diploid) 2	26.464
	CNS0095603	Golden flower (diploid) 3	26.694
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.179
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.457
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.583
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.026
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.751
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.753
	CNS0095610	Silvery flower (tetraploid) 1	1.647
	CNS0095611	Silvery flower (tetraploid) 2	3.192
	CNS0095612	Silvery flower (tetraploid) 3	1.840
	CNS0095613	Golden flower (tetraploid) 1	0.869
	CNS0095614	Golden flower (tetraploid) 2	4.251
	CNS0095615	Golden flower (tetraploid) 3	0.208
CRA001975	CRR073297	Stem 1	25.854
	CRR073298	Stem 2	19.236
	CRR073299	Stem 3	34.839
	CRR073300	Leaf 1	4.245
	CRR073301	Leaf 2	7.717
	CRR073302	Leaf 3	2.483
	CRR073303	Juvenile bud 1	2.695
	CRR073304	Juvenile bud 2	0.257
	CRR073305	Juvenile bud 3	3.056
	CRR073306	Third green 1	0.419
	CRR073307	Third green 2	0.424
	CRR073308	Third green 3	0.990
	CRR073309	Second white 1	0.339
	CRR073310	Second white 2	0.734
	CRR073311	Second white 3	0.345
	CRR073312	Silver flowering 1	0.118
	CRR073313	Silver flowering 2	0.203
	CRR073314	Silver flowering 3	0.504
	CRR073315	Gold flowering 1	13.316
	CRR073316	Gold flowering 2	22.912
	CRR073317	Gold flowering 3	19.075
	CRR073318	Tawny withering 1	21.458
	CRR073319	Tawny withering 2	23.367
	CRR073320	Tawny withering 3	28.611