Detail information of GWHGAAZE005925


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011016499.11.22045E-57PREDICTED: RING-H2 zinc finger protein RHA4a-like [Populus euphratica]
Swissprottr|Q84TF5|RHA4A_ARATH2E-47RING-H2 zinc finger protein RHA4a
trEMBLtr|A0A059CG75|A0A059CG75_EUCGR4E-57Uncharacterized protein {ECO:0000313|EMBL:KCW77423.1}
TAIR10AT4G24015.11E-29RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1632097816322192-
GWHAAZE00000002mRNA1632097816322192-
GWHAAZE00000002exon1632097816321335-
GWHAAZE00000002exon1632159416321679-
GWHAAZE00000002exon1632196516322192-
GWHAAZE00000002CDS1632196516322192-
GWHAAZE00000002CDS1632159416321679-
GWHAAZE00000002CDS1632097816321335-
Transcript Sequence

Network for GWHGAAZE005925

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21051481.70E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.573
SRR3591706second leaf1.317
SRR3591707mature leaf3.163
SRR3591708Shoot apex1.367
SRR3591709Stem0.454
SRR3591710White floral bud0.161
SRR3591711White flower0.135
SRR3591712Green floral bud0.969
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.082
SRR8316896Juvenile bud stage 0.223
SRR8316897Juvenile bud stage 0.160
SRR8316894Third green stage 0.183
SRR8316900Third green stage 0.992
SRR8316901Third green stage 0.805
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.953
SRR8316903Complete white stage 0.160
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.003
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control1.975
SRR6706287Light intensity 50%1.637
SRR6706288Light intensity 20%2.212
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.368
CNS0095596Whole white alabastrum(diploid) 30.279
CNS0095597Whole white alabastrum(diploid) 40.241
CNS0095598Silvery flower (diploied) 10.516
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.077
CNS0095603Golden flower (diploid) 30.145
CNS0095604Slightly white alabastrum(tetraploid) 11.233
CNS0095605Slightly white alabastrum(tetraploid) 20.138
CNS0095606Slightly white alabastrum(tetraploid) 31.930
CNS0095607Whole white alabastrum(tetraploid) 10.194
CNS0095608Whole white alabastrum(tetraploid) 20.215
CNS0095609Whole white alabastrum(tetraploid) 30.621
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.378
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.324
CRR073298Stem 20.404
CRR073299Stem 30.334
CRR073300Leaf 10.739
CRR073301Leaf 20.943
CRR073302Leaf 30.454
CRR073303Juvenile bud 11.176
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.658
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.865
CRR073316Gold flowering 20.444
CRR073317Gold flowering 31.325
CRR073318Tawny withering 13.029
CRR073319Tawny withering 20.315
CRR073320Tawny withering 34.764