Gene detail

Detail information of GWHGAAZE005930

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265246.1	2.4904E-113	PREDICTED: F-box protein SKIP8 [Vitis vinifera]
Swissprot	tr\|Q93YV9\|SKIP8_ARATH	8E-105	F-box protein SKIP8
trEMBL	tr\|A0A0A0KX34\|A0A0A0KX34_CUCSA	2E-113	Uncharacterized protein {ECO:0000313\|EMBL:KGN53419.1}
TAIR10	AT4G10925.3	3E-84	Nuclear transport factor 2 (NTF2) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	16371676	16383540	-
GWHAAZE00000002	mRNA	16371676	16383540	-
GWHAAZE00000002	exon	16383514	16383540	-
GWHAAZE00000002	exon	16383301	16383456	-
GWHAAZE00000002	exon	16376405	16376601	-
GWHAAZE00000002	exon	16374339	16374524	-
GWHAAZE00000002	exon	16371676	16371925	-
GWHAAZE00000002	CDS	16383514	16383540	-
GWHAAZE00000002	CDS	16383301	16383456	-
GWHAAZE00000002	CDS	16376405	16376601	-
GWHAAZE00000002	CDS	16374339	16374524	-
GWHAAZE00000002	CDS	16371676	16371925	-

Transcript Sequence
>GWHTAAZE005938 ATGGCGGCAACGGCAACGGTTTCGTATACTGGTGCGTCCATGATGGAACAATTGGTTCCTGAGATTACTACTCATGCTTTGAGCTACTTGGATTATCCGAGTCTTTGTCGCCTCTCCATGACGAATTCCTCAATGCGGAAGGCTGCTAATGATGATAATGCTTGGAAAGCGCTTTATCACAAGGATTTCACGATGGAACAGGATACTGTGACACCTGTTAATGGATGGAAGGCTTACTATGCCTCTACTAGAGCAATTGTGAATATCAATGCGGGCTTCTTTAACATCATTAGAGATAGATCACTTCCAGCAATGGGCCATCTCTGGCTTAATGCAGATTATGTGAAGTGTGTACATGCCTCTGGAGAGTTCTTTACAGGTTACAATGGAGTAATGCAGAGCTGGCAGTTGGCATTTACGTGGCAACAAGGGGTGGAGTTCCAGATAAGAGATGTGAGAGCACGGGTACTTACGGACATGGCTTGGGTTACCATGAAAGCGTATGTTGATATGGAGAATGACCCATTTAATGTGACTAACATTTTCGAGTTCCACAATGGGCAGTGGGGTTGTAAGGCATGTGGTAAGGAAGAGATTGAGCAGGGATGTAACGGAGAGGGAAGGATTCAAGGTGGTATAGCAACAGTACCGGGCTTTGGTTGGTGGCCAATAAAAGCTTACAGGCCTTGCCCAGGATTTGTGGCTTCGGGTGGTAGGTATAAGCGACAAGGTCAAAGCATGGATGAGGTTGCTGGTTTCGGGAGGGTTGAGAAAGTAGTGCCCATTGGGACCAGCGATGAGGATCCATCAAGGTAG

Network for GWHGAAZE005930

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	17	56	0.0004
PF13474.7	SnoaL_3	86	189	9.10E-19

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.476
	SRR3591706	second leaf	27.296
	SRR3591707	mature leaf	23.010
	SRR3591708	Shoot apex	25.312
	SRR3591709	Stem	10.368
	SRR3591710	White floral bud	15.513
	SRR3591711	White flower	13.474
	SRR3591712	Green floral bud	18.861
	SRR3591713	Yellow flower	11.528
SRP173429	SRR8316895	Juvenile bud stage	13.464
	SRR8316896	Juvenile bud stage	17.545
	SRR8316897	Juvenile bud stage	7.814
	SRR8316894	Third green stage	7.600
	SRR8316900	Third green stage	22.267
	SRR8316901	Third green stage	22.021
	SRR8316898	Complete white stage	5.234
	SRR8316899	Complete white stage	23.379
	SRR8316903	Complete white stage	9.239
	SRR8316902	Silver flowering stage	5.677
	SRR8316904	Silver flowering stage	6.191
	SRR8316905	Silver flowering stage	2.447
	SRR8316906	Gold flowering stage	11.649
	SRR8316907	Gold flowering stage	9.735
	SRR8316908	Gold flowering stage	13.126
SRP132670	SRR6706286	Control	16.582
	SRR6706287	Light intensity 50%	17.288
	SRR6706288	Light intensity 20%	20.872
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.947
	CNS0095593	Slightly white alabastrum(diploid) 2	15.714
	CNS0095594	Slightly white alabastrum(diploid) 3	16.127
	CNS0095595	Whole white alabastrum(diploid) 2	21.694
	CNS0095596	Whole white alabastrum(diploid) 3	20.165
	CNS0095597	Whole white alabastrum(diploid) 4	17.384
	CNS0095598	Silvery flower (diploied) 1	17.698
	CNS0095599	Silvery flower (diploied) 2	13.393
	CNS0095600	Silvery flower (diploied) 3	14.700
	CNS0095601	Golden flower (diploid) 1	18.257
	CNS0095602	Golden flower (diploid) 2	15.285
	CNS0095603	Golden flower (diploid) 3	14.835
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.490
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.466
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.690
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.046
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.319
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.915
	CNS0095610	Silvery flower (tetraploid) 1	13.761
	CNS0095611	Silvery flower (tetraploid) 2	15.657
	CNS0095612	Silvery flower (tetraploid) 3	11.439
	CNS0095613	Golden flower (tetraploid) 1	13.397
	CNS0095614	Golden flower (tetraploid) 2	15.538
	CNS0095615	Golden flower (tetraploid) 3	10.396
CRA001975	CRR073297	Stem 1	19.364
	CRR073298	Stem 2	18.657
	CRR073299	Stem 3	19.950
	CRR073300	Leaf 1	18.268
	CRR073301	Leaf 2	17.204
	CRR073302	Leaf 3	19.871
	CRR073303	Juvenile bud 1	18.970
	CRR073304	Juvenile bud 2	13.883
	CRR073305	Juvenile bud 3	14.617
	CRR073306	Third green 1	5.639
	CRR073307	Third green 2	3.558
	CRR073308	Third green 3	4.526
	CRR073309	Second white 1	7.521
	CRR073310	Second white 2	4.377
	CRR073311	Second white 3	5.085
	CRR073312	Silver flowering 1	6.494
	CRR073313	Silver flowering 2	7.820
	CRR073314	Silver flowering 3	1.799
	CRR073315	Gold flowering 1	22.382
	CRR073316	Gold flowering 2	24.564
	CRR073317	Gold flowering 3	18.120
	CRR073318	Tawny withering 1	14.895
	CRR073319	Tawny withering 2	11.864
	CRR073320	Tawny withering 3	14.296