Gene detail

Detail information of GWHGAAZE005946

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010661643.1	0	PREDICTED: origin recognition complex subunit 4 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q6EWX1\|ORC4_ARATH	1E-174	Origin of replication complex subunit 4 {ECO:0000303\|PubMed:16179646}
trEMBL	tr\|M1CZZ9\|M1CZZ9_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400078378}
TAIR10	AT2G01120.1	2E-134	origin recognition complex subunit 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	16623692	16647276	-
GWHAAZE00000002	mRNA	16623692	16647276	-
GWHAAZE00000002	exon	16646935	16647276	-
GWHAAZE00000002	exon	16645929	16645985	-
GWHAAZE00000002	exon	16644927	16644977	-
GWHAAZE00000002	exon	16644797	16644840	-
GWHAAZE00000002	exon	16644554	16644617	-
GWHAAZE00000002	exon	16644214	16644300	-
GWHAAZE00000002	exon	16643147	16643238	-
GWHAAZE00000002	exon	16642967	16643048	-
GWHAAZE00000002	exon	16642530	16642615	-
GWHAAZE00000002	exon	16642320	16642429	-
GWHAAZE00000002	exon	16639938	16640030	-
GWHAAZE00000002	exon	16639781	16639845	-
GWHAAZE00000002	exon	16639527	16639670	-
GWHAAZE00000002	exon	16630766	16630875	-
GWHAAZE00000002	exon	16628153	16629124	-
GWHAAZE00000002	exon	16623692	16624664	-
GWHAAZE00000002	CDS	16646935	16647276	-
GWHAAZE00000002	CDS	16645929	16645985	-
GWHAAZE00000002	CDS	16644927	16644977	-
GWHAAZE00000002	CDS	16644797	16644840	-
GWHAAZE00000002	CDS	16644554	16644617	-
GWHAAZE00000002	CDS	16644214	16644300	-
GWHAAZE00000002	CDS	16643147	16643238	-
GWHAAZE00000002	CDS	16642967	16643048	-
GWHAAZE00000002	CDS	16642530	16642615	-
GWHAAZE00000002	CDS	16642320	16642429	-
GWHAAZE00000002	CDS	16639938	16640030	-
GWHAAZE00000002	CDS	16639781	16639845	-
GWHAAZE00000002	CDS	16639527	16639670	-
GWHAAZE00000002	CDS	16630766	16630875	-
GWHAAZE00000002	CDS	16628153	16629124	-
GWHAAZE00000002	CDS	16623692	16624664	-

Transcript Sequence
>GWHTAAZE005954 ATGGGTCGAGAAAGTCCATCTGTGGAAGCTCTAGTCCTCCTTAGGACCAGACTATGCAACCCTAATTTCATTTTCTCCCATTCCTCGGACTCTCATGACAGCAACTACAGGTGTGATTCCTTCTTTGCTACCTTCCTTTTGATGTGGAGAAAATGTATGAAACTGAAAGAGGGTCCAGGACCTCTTCCTTTTGATTTGATTTTTCATGTGTTATTGGGGGGAAATAACAGTAAGCTTTTTACCATTTTCAGCAAGCTAAAGTTTATAATATCAAGCTCAGTCACCGAGGCCTGTAACAACTCAGTTCTACTTCTAGGTCCTCGTGGCTGTGGGAAAATTGAGGTGTTGGATCTTGTTCTAGAAGATTTACTGAAAGAATATCCTGATATGATCACAGTGGAAATTGCTAGACAATTATGTGTGGAGAACCAGTTGACGTTCTCAAAAATGGCGTCTTTTGATGATAATTCCCAGTTCATGGTAGCCATGTTGCGGGAGTGTGGTTTGGCCCACAAAACCGTTATATTTATACTGGATGAGTTTGATCTCTTTGCACAGGGCAAACAGCGACTACTCTACAGCCTGCTAGATGCAATGCAATCCATAACATCACAAGCTGTTGTTGTTGGTATAAGTTGCCGACTGGACGCAGATCAGCTCTTGGAGAAAAGAGTAAGATCTCGATTCTCACATAGGAAACTGTTGTTTCTTCCTCCCTCAGAGGAAGATCTACAGAGACTGCTGAAGCACATGTTGCTATTACCAACAGATTCAAGTCTTCCTCATGAATATGTGGTAGAGTTCAACACAAGGCTTCTAAACATATTGGCCGATAAAAGATTCAAAGAAATTGTTGATAAGGTATCAAATTCTGATTCCACCTTCAACCATTTGCTGAGGTTTCTGTTCTGTACTGTTTGTCATATGGATGTGGGATCTGGTTTCATATCGCTTGAGAACTTCAAAGCTGCACTTGCAAACATCCAAAGGCAACCAAAGCTTGAATACTTAAAAGATTGCTCCATCTTGGAACTCTATCTTTTGGTCTGCATGAAAAGGTTGGAAGTCAAAGAGCAAGAGTTGTACAACTTCAATTCTGTAATGAAAGAGTACAAAAATATACATGATTCATTCCAGACGTCGGATTATTATGCACGCAACGTATGCTTACGGGCATTTGAGCACCTGCTACAGCGCGAATTAATCTCCTTTGCGGACAATAGAGGGAGCAATCAGTCTGTTGAATTTCGGCCTGTTAAGCTACTGATCTCATCCCATCAACTATATCAAGGATTGAAATCTTATCGTGCTTGTCCATACAGCGTGTCGGACTTTGAAGAACCAAGAATACGAAGATATAGTGCCATGGCTTCCGAAAGGGAAAATTTCGACCTTTCAGGACCATTACATTTAACTTCTGTTGACTGGAAAAATACAGATCACCGCAGATCCATCGCCGCCAGTTTGATCCAGGGGGTCTACATTCTAGAGCGGGACCGCCACGAAAACCGACAAGGGTCCGAAGCCCTTGCTCCCCCTTGGTGGAAGTTCTTCCATTTTAAATTGCACCGCCACCTCACAGATGATGCTGATTCATCCATCTTTGGGGCCATATACGAGTTTCAACCCCCACCATCTACTTCCTACAACTCACCAAACGAAAGCCCGCATTATGTTCTCGCCTTTCGAGGTACCTCAAAAAAAGGTGACTCACTCTCCCGAGACCTCCAGCTAGACCTCCACCTCATCCAAAATGGACTGCACCGCACATCTCGGTTTGAAATAGCCATCCAGGCTGTGAGAAACACGGCTGCTGCAGCAGGAAACTCGCAGGTCTGGTTAGCTGGCCACTCCCTTGGCTCGGCCATGGCTATGCTTGCTGGCAAGCATATGGCTAAGACGGGCATTTTCCTCGAAGCTTTTCTGTTCAACCCTCCATTCGTTTCTGCCCCAATTGAGAAAATCAAGCACAAGAAAGTGAAGCACGGGATCCGAATCGCTAGCAGCTTTGTCACTGCCGGGCTTGCTGCTGCGGCGAAGGTAAAGCACCAGAAGAACTGGTCGAAAGAAGAGCCGTTTGTTGCTTTGCGCGATTGGGTGCCATGTTTGTTTGTGAACCCGTGTGATCACATATGCTCAGAGTATGTTGGGTATTTTGAACACCGAAAAAAGATGGAGGATATTGGAGCAGGGGGGATTGAGAGATTGGCGACTCAGCATTCAATTGGGGGTTTGGTTATGAGTGTGATTGGGAAGGAGTTGGATGAGCCGCTCCACCTTATTCCTTCGGCAAATATGACGATCAACTTGTCACCTTTCCGCGAGTTCAAAAAAGATCATGGCATTCATCAGTGGTGGAGATGTGATCTGAACTTGCAATCTAAAATTTACAAGTACAGGAAAAATGAAGATCACCGCAGGTCCGTTGCAGCCAGTTTGGTTCAGGGCGTCTACGTTTTAGAACAGGACCGTGACGAAAACCGACAAGCGTCCGAAGCTCTTGCTCCCCCTTGGTGGAAGTTCTTCCATTTTAACTTACACCGTCACCTCATAGACGATACTGGTTCTATCTTTGGAGCCATATACGAGTTCCAACCCCCATCATCTACCTCCCACAACTCACCAAACGAAAGCCCGCGACACATTGTCGCCTTTCGAGGCACCTCAACCAAAGGAGATTCAGTCTCCCAAGACCTCCAACTAGACCTCCATTTCGTCCGAAATGGGCTCCACCGAACATCTCGGTTCGAATTAGCCATCCAAGCTGTGAGAAACACGGCTGCAGCAGCTGGAAGCTCACCTGTCTGGTTAGCTGGCCACTCCCTAGGCTCAGCCATGGCTATGCTTGCTGGCAAGCATATGGCTAAGACCGGGATTTTCCTCGAAACTTTTCTATTCAACCCTCCATTCGTTTCCGCCCCAATCGAGAAAATCAAGCACAAGAAAGTTAGGCACGGGCTCCGAATCGCTACCAGTTTCGTTACAGCAGGGCTTGCTGTTGTGGCAATGGTAAAACACCAAAAGAACCAGGCAAAAGAAGAGCCTTTTGTTGCTTTGTGTGATTGGGTTCCGTGTTTGTTTGTGAACCCGTGTGATCACATTTGTGCAGAGTATGTTGGGTATTTTGAACACCGGAAAAAGATGGAGGAGATAGGAGCAGGGGAGATTGAGAGATTGGCGACCCAGCACTCAATTGGGGGTTTAGTTATGAGTGTGATTGGGGAGGAGTCGGATGAGCCGCTGCACCTCATTCCTTCAGCAAATCTAACGGTCAATTTGAGCACTTTCCGCGATTTCAGAAGAGATCATGGCATTCATCAATGGTGGAGATCAGATCTGAACTTGAATTCTAAAATTTACAAGTACAAATAG

Network for GWHGAAZE005946

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.30	AAA	102	232	3.70E-05
PF14629.7	ORC4_C	247	430	5.00E-36
PF01764.26	Lipase_3	598	636	5.50E-05

Protein Sequence

>GWHPAAZE005950
MGRESPSVEALVLLRTRLCNPNFIFSHSSDSHDSNYRCDSFFATFLLMWRKCMKLKEGPGPLPFDLIFHVLLGGNNSKLFTIFSKLKFIISSSVTEACNNSVLLLGPRGCGKIEVLDLVLEDLLKEYPDMITVEIARQLCVENQLTFSKMASFDDNSQFMVAMLRECGLAHKTVIFILDEFDLFAQGKQRLLYSLLDAMQSITSQAVVVGISCRLDADQLLEKRVRSRFSHRKLLFLPPSEEDLQRLLKHMLLLPTDSSLPHEYVVEFNTRLLNILADKRFKEIVDKVSNSDSTFNHLLRFLFCTVCHMDVGSGFISLENFKAALANIQRQPKLEYLKDCSILELYLLVCMKRLEVKEQELYNFNSVMKEYKNIHDSFQTSDYYARNVCLRAFEHLLQRELISFADNRGSNQSVEFRPVKLLISSHQLYQGLKSYRACPYSVSDFEEPRIRRYSAMASERENFDLSGPLHLTSVDWKNTDHRRSIAASLIQGVYILERDRHENRQGSEALAPPWWKFFHFKLHRHLTDDADSSIFGAIYEFQPPPSTSYNSPNESPHYVLAFRGTSKKGDSLSRDLQLDLHLIQNGLHRTSRFEIAIQAVRNTAAAAGNSQVWLAGHSLGSAMAMLAGKHMAKTGIFLEAFLFNPPFVSAPIEKIKHKKVKHGIRIASSFVTAGLAAAAKVKHQKNWSKEEPFVALRDWVPCLFVNPCDHICSEYVGYFEHRKKMEDIGAGGIERLATQHSIGGLVMSVIGKELDEPLHLIPSANMTINLSPFREFKKDHGIHQWWRCDLNLQSKIYKYRKNEDHRRSVAASLVQGVYVLEQDRDENRQASEALAPPWWKFFHFNLHRHLIDDTGSIFGAIYEFQPPSSTSHNSPNESPRHIVAFRGTSTKGDSVSQDLQLDLHFVRNGLHRTSRFELAIQAVRNTAAAAGSSPVWLAGHSLGSAMAMLAGKHMAKTGIFLETFLFNPPFVSAPIEKIKHKKVRHGLRIATSFVTAGLAVVAMVKHQKNQAKEEPFVALCDWVPCLFVNPCDHICAEYVGYFEHRKKMEEIGAGEIERLATQHSIGGLVMSVIGEESDEPLHLIPSANLTVNLSTFRDFRRDHGIHQWWRSDLNLNSKIYKYK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02606	ORC4	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.182
	SRR3591706	second leaf	19.877
	SRR3591707	mature leaf	8.035
	SRR3591708	Shoot apex	23.862
	SRR3591709	Stem	10.396
	SRR3591710	White floral bud	10.344
	SRR3591711	White flower	8.930
	SRR3591712	Green floral bud	18.670
	SRR3591713	Yellow flower	5.585
SRP173429	SRR8316895	Juvenile bud stage	5.454
	SRR8316896	Juvenile bud stage	6.543
	SRR8316897	Juvenile bud stage	4.022
	SRR8316894	Third green stage	4.108
	SRR8316900	Third green stage	10.941
	SRR8316901	Third green stage	10.100
	SRR8316898	Complete white stage	2.494
	SRR8316899	Complete white stage	12.699
	SRR8316903	Complete white stage	3.979
	SRR8316902	Silver flowering stage	0.969
	SRR8316904	Silver flowering stage	1.274
	SRR8316905	Silver flowering stage	0.772
	SRR8316906	Gold flowering stage	3.229
	SRR8316907	Gold flowering stage	3.004
	SRR8316908	Gold flowering stage	2.840
SRP132670	SRR6706286	Control	11.273
	SRR6706287	Light intensity 50%	12.977
	SRR6706288	Light intensity 20%	14.279
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.950
	CNS0095593	Slightly white alabastrum(diploid) 2	8.754
	CNS0095594	Slightly white alabastrum(diploid) 3	6.395
	CNS0095595	Whole white alabastrum(diploid) 2	6.645
	CNS0095596	Whole white alabastrum(diploid) 3	5.161
	CNS0095597	Whole white alabastrum(diploid) 4	5.622
	CNS0095598	Silvery flower (diploied) 1	5.904
	CNS0095599	Silvery flower (diploied) 2	4.024
	CNS0095600	Silvery flower (diploied) 3	4.709
	CNS0095601	Golden flower (diploid) 1	3.482
	CNS0095602	Golden flower (diploid) 2	3.967
	CNS0095603	Golden flower (diploid) 3	3.533
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.130
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.328
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.897
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.397
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.887
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.534
	CNS0095610	Silvery flower (tetraploid) 1	3.612
	CNS0095611	Silvery flower (tetraploid) 2	4.710
	CNS0095612	Silvery flower (tetraploid) 3	5.267
	CNS0095613	Golden flower (tetraploid) 1	2.949
	CNS0095614	Golden flower (tetraploid) 2	3.406
	CNS0095615	Golden flower (tetraploid) 3	3.886
CRA001975	CRR073297	Stem 1	12.498
	CRR073298	Stem 2	11.932
	CRR073299	Stem 3	8.554
	CRR073300	Leaf 1	17.415
	CRR073301	Leaf 2	15.316
	CRR073302	Leaf 3	11.528
	CRR073303	Juvenile bud 1	11.891
	CRR073304	Juvenile bud 2	9.147
	CRR073305	Juvenile bud 3	11.240
	CRR073306	Third green 1	4.381
	CRR073307	Third green 2	3.757
	CRR073308	Third green 3	3.451
	CRR073309	Second white 1	2.644
	CRR073310	Second white 2	1.498
	CRR073311	Second white 3	1.965
	CRR073312	Silver flowering 1	2.625
	CRR073313	Silver flowering 2	2.686
	CRR073314	Silver flowering 3	1.713
	CRR073315	Gold flowering 1	3.448
	CRR073316	Gold flowering 2	3.788
	CRR073317	Gold flowering 3	1.992
	CRR073318	Tawny withering 1	6.353
	CRR073319	Tawny withering 2	5.963
	CRR073320	Tawny withering 3	6.979