Detail information of GWHGAAZE005954


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002270160.10PREDICTED: putative E3 ubiquitin-protein ligase UBR7 [Vitis vinifera]
trEMBLtr|D7TVF7|D7TVF7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI34482.3}
TAIR10AT4G23860.33E-127PHD finger protein-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1673481316741247-
GWHAAZE00000002mRNA1673481316741247-
GWHAAZE00000002exon1674116716741247-
GWHAAZE00000002exon1673963716739795-
GWHAAZE00000002exon1673670616736966-
GWHAAZE00000002exon1673499516735657-
GWHAAZE00000002exon1673481316734902-
GWHAAZE00000002CDS1674116716741247-
GWHAAZE00000002CDS1673963716739795-
GWHAAZE00000002CDS1673670616736966-
GWHAAZE00000002CDS1673499516735657-
GWHAAZE00000002CDS1673481316734902-
Transcript Sequence

Network for GWHGAAZE005954

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02207.21zf-UBR411051.00E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBR-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.000
SRR3591706second leaf16.737
SRR3591707mature leaf20.430
SRR3591708Shoot apex46.675
SRR3591709Stem20.389
SRR3591710White floral bud24.837
SRR3591711White flower31.958
SRR3591712Green floral bud23.467
SRR3591713Yellow flower21.130
SRP173429 SRR8316895Juvenile bud stage 18.645
SRR8316896Juvenile bud stage 22.644
SRR8316897Juvenile bud stage 8.870
SRR8316894Third green stage 8.030
SRR8316900Third green stage 19.311
SRR8316901Third green stage 18.805
SRR8316898Complete white stage 8.164
SRR8316899Complete white stage 32.241
SRR8316903Complete white stage 15.242
SRR8316902Silver flowering stage11.895
SRR8316904Silver flowering stage12.940
SRR8316905Silver flowering stage6.731
SRR8316906Gold flowering stage 21.503
SRR8316907Gold flowering stage 20.908
SRR8316908Gold flowering stage 24.854
SRP132670SRR6706286Control22.154
SRR6706287Light intensity 50%22.195
SRR6706288Light intensity 20%24.427
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.421
CNS0095593Slightly white alabastrum(diploid) 215.246
CNS0095594Slightly white alabastrum(diploid) 314.794
CNS0095595Whole white alabastrum(diploid) 214.248
CNS0095596Whole white alabastrum(diploid) 312.489
CNS0095597Whole white alabastrum(diploid) 411.784
CNS0095598Silvery flower (diploied) 120.786
CNS0095599Silvery flower (diploied) 219.619
CNS0095600Silvery flower (diploied) 322.608
CNS0095601Golden flower (diploid) 121.265
CNS0095602Golden flower (diploid) 221.113
CNS0095603Golden flower (diploid) 321.557
CNS0095604Slightly white alabastrum(tetraploid) 118.085
CNS0095605Slightly white alabastrum(tetraploid) 211.093
CNS0095606Slightly white alabastrum(tetraploid) 319.716
CNS0095607Whole white alabastrum(tetraploid) 19.468
CNS0095608Whole white alabastrum(tetraploid) 26.898
CNS0095609Whole white alabastrum(tetraploid) 315.123
CNS0095610Silvery flower (tetraploid) 118.924
CNS0095611Silvery flower (tetraploid) 223.602
CNS0095612Silvery flower (tetraploid) 318.020
CNS0095613Golden flower (tetraploid) 19.596
CNS0095614Golden flower (tetraploid) 215.123
CNS0095615Golden flower (tetraploid) 315.495
CRA001975CRR073297Stem 128.973
CRR073298Stem 228.755
CRR073299Stem 337.658
CRR073300Leaf 126.379
CRR073301Leaf 223.282
CRR073302Leaf 324.943
CRR073303Juvenile bud 128.316
CRR073304Juvenile bud 220.803
CRR073305Juvenile bud 330.115
CRR073306Third green 126.002
CRR073307Third green 219.328
CRR073308Third green 323.194
CRR073309Second white 134.239
CRR073310Second white 227.066
CRR073311Second white 324.485
CRR073312Silver flowering 116.958
CRR073313Silver flowering 220.419
CRR073314Silver flowering 314.448
CRR073315Gold flowering 123.579
CRR073316Gold flowering 229.741
CRR073317Gold flowering 328.945
CRR073318Tawny withering 128.268
CRR073319Tawny withering 219.871
CRR073320Tawny withering 329.767