Gene detail

Detail information of GWHGAAZE005955

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011101044.1	8.9345E-115	PREDICTED: putative RING-H2 finger protein ATL21B [Sesamum indicum]
Swissprot	tr\|P0CH01\|AT21A_ARATH	3E-61	Putative RING-H2 finger protein ATL21A (Precursor)
trEMBL	tr\|A0A022RIM0\|A0A022RIM0_ERYGU	2E-108	Uncharacterized protein {ECO:0000313\|EMBL:EYU40016.1}
TAIR10	AT5G53110.1	7E-69	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	16771058	16776265	+
GWHAAZE00000002	mRNA	16771058	16776265	+
GWHAAZE00000002	exon	16771058	16771119	+
GWHAAZE00000002	exon	16771213	16771937	+
GWHAAZE00000002	exon	16775793	16776265	+
GWHAAZE00000002	CDS	16771058	16771119	+
GWHAAZE00000002	CDS	16771213	16771937	+
GWHAAZE00000002	CDS	16775793	16776265	+

Transcript Sequence
>GWHTAAZE005963 ATGATGCTATCTCATAACGCCAGTAATAGTAGCGAAAGGCTCTGTCTCAACGACCGTGACAAAACAAAAGGCAAACACAATGGGTATGTTGTGCTTACTATCACAAATGGAGATCTTACCATTGCTACTCCTCTCCTTTCTCTTCTACCCCACACATCTCTCTCCGCCGAACTCTGCAGACAGCTTGCCTGCGGCAAAAACTCCCCGGAGCTCCGGTTCCCCTTCTACTTAGAAAACCATCAAACCGGCTTTTGCGGTTACCAAGGCTTCGGTTTATTATGCAATCAAACTCAACCAATCCTCAACTTACCCAACTCCGGTAATTATGCCGTTAAGAGAATAGACTACGCCACACAAGAGATTTTCATAGACCCGGGGTTCTGCACACCGGGTCGGATCCTCTCGTTCACTCTTCGAGACTCGCCATACAGAGGGGAGTATACGACAGATTATACTATCTACAACTGTTCGGAGAGAATTAACGGGGAGATGTACTCGGCTGCGAGATTAGATTGTCTCGGTGGCGATAATTATACGGTTGTTGCAGTTCCGGAGGATTCGGTGGGTGCGGAATTGCCGACTTTTTGTCGGAATGTTACGACGGTGGGGATTCCGGTACAGCTACGGGTGAAGGTGTTTGGACCATCGGTGGGGCTTCGGGAGGATCTTCAGCTGACGTGGGATGTACCCAATTGTAAATATTGCGAAAGTAAAGGTGGGATTTGTGGGCTCAAGAATCAGTGGGAGTTCGATACTATTAGTTGCACTAATAAGCGTCCTAGAAGAGGTCTTCCAAGGTCTGCTAAATATGGAATAATCGTTGGAGTTGGAATACCAGGGCTTGTATTCATCATCGGACTTACATGTTTTGTTTGTAACAAGTTTAGGGCATTTAGCAACCGTCATCGCCTTGACACTGAACTTTCAACCGCTATTATGATCACTCCACAACAAGCCCTTTTTCGAAATGGCCTTGATGGTTCGACTATAGAATCATACCCTAAAACGGTTCTTGGCGAGAGTTGTCGATTGCCCAAACCAAATGACAGCACTTGCCCAATATGTCTATCCGAGTACTTGCCAAAAGATACCTTAAGGACTATACCAGAGTGCAACCACTATTTTCATGCAAAATGCATAGATGAGTGGCTCAAGGTAAATGCCACTTGCCCAGTATGCCGGAATACGCCAGAAAGTTCATCAGTGGTAACACCTTGCTCATCAGTGTCTTCAACAACAACGTCATCGACAACCTCGTAA

Network for GWHGAAZE005955

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13947.7	GUB_WAK_bind	59	122	2.10E-15
PF13639.7	zf-RING_2	351	394	5.50E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.518
	SRR3591706	second leaf	1.902
	SRR3591707	mature leaf	3.392
	SRR3591708	Shoot apex	2.319
	SRR3591709	Stem	9.352
	SRR3591710	White floral bud	5.591
	SRR3591711	White flower	9.743
	SRR3591712	Green floral bud	0.327
	SRR3591713	Yellow flower	7.083
SRP173429	SRR8316895	Juvenile bud stage	8.621
	SRR8316896	Juvenile bud stage	5.542
	SRR8316897	Juvenile bud stage	5.088
	SRR8316894	Third green stage	0.610
	SRR8316900	Third green stage	0.681
	SRR8316901	Third green stage	1.691
	SRR8316898	Complete white stage	3.191
	SRR8316899	Complete white stage	6.502
	SRR8316903	Complete white stage	5.249
	SRR8316902	Silver flowering stage	17.828
	SRR8316904	Silver flowering stage	22.800
	SRR8316905	Silver flowering stage	13.675
	SRR8316906	Gold flowering stage	48.277
	SRR8316907	Gold flowering stage	47.135
	SRR8316908	Gold flowering stage	43.672
SRP132670	SRR6706286	Control	1.508
	SRR6706287	Light intensity 50%	2.782
	SRR6706288	Light intensity 20%	1.865
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.915
	CNS0095593	Slightly white alabastrum(diploid) 2	12.386
	CNS0095594	Slightly white alabastrum(diploid) 3	11.975
	CNS0095595	Whole white alabastrum(diploid) 2	13.067
	CNS0095596	Whole white alabastrum(diploid) 3	0.476
	CNS0095597	Whole white alabastrum(diploid) 4	5.253
	CNS0095598	Silvery flower (diploied) 1	14.803
	CNS0095599	Silvery flower (diploied) 2	15.268
	CNS0095600	Silvery flower (diploied) 3	16.462
	CNS0095601	Golden flower (diploid) 1	15.649
	CNS0095602	Golden flower (diploid) 2	19.407
	CNS0095603	Golden flower (diploid) 3	17.289
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.538
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.568
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.104
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.236
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.117
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.634
	CNS0095610	Silvery flower (tetraploid) 1	6.712
	CNS0095611	Silvery flower (tetraploid) 2	11.022
	CNS0095612	Silvery flower (tetraploid) 3	76.076
	CNS0095613	Golden flower (tetraploid) 1	4.010
	CNS0095614	Golden flower (tetraploid) 2	1.877
	CNS0095615	Golden flower (tetraploid) 3	1.789
CRA001975	CRR073297	Stem 1	2.367
	CRR073298	Stem 2	1.742
	CRR073299	Stem 3	1.825
	CRR073300	Leaf 1	2.197
	CRR073301	Leaf 2	3.051
	CRR073302	Leaf 3	2.158
	CRR073303	Juvenile bud 1	1.183
	CRR073304	Juvenile bud 2	3.897
	CRR073305	Juvenile bud 3	4.988
	CRR073306	Third green 1	200.225
	CRR073307	Third green 2	118.101
	CRR073308	Third green 3	125.432
	CRR073309	Second white 1	323.363
	CRR073310	Second white 2	280.224
	CRR073311	Second white 3	233.418
	CRR073312	Silver flowering 1	202.328
	CRR073313	Silver flowering 2	199.426
	CRR073314	Silver flowering 3	133.495
	CRR073315	Gold flowering 1	8.624
	CRR073316	Gold flowering 2	21.613
	CRR073317	Gold flowering 3	15.592
	CRR073318	Tawny withering 1	27.452
	CRR073319	Tawny withering 2	42.409
	CRR073320	Tawny withering 3	22.150