Gene detail

Detail information of GWHGAAZE005956

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009621900.1	1.3294E-42	PREDICTED: mitochondrial inner membrane protein OXA1-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q42191\|OXA1_ARATH	8E-21	Mitochondrial inner membrane protein OXA1 (Precursor)
trEMBL	tr\|V4SXF4\|V4SXF4_9ROSI	8E-41	Uncharacterized protein {ECO:0000313\|EMBL:ESR52593.1}
TAIR10	AT5G62050.1	3E-11	homolog of yeast oxidase assembly 1 (OXA1)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	16787491	16794093	+
GWHAAZE00000002	mRNA	16787491	16794093	+
GWHAAZE00000002	exon	16787491	16787957	+
GWHAAZE00000002	exon	16788263	16788330	+
GWHAAZE00000002	exon	16788803	16788893	+
GWHAAZE00000002	exon	16791565	16791612	+
GWHAAZE00000002	exon	16792443	16792501	+
GWHAAZE00000002	exon	16793873	16793948	+
GWHAAZE00000002	exon	16794046	16794093	+
GWHAAZE00000002	CDS	16787491	16787957	+
GWHAAZE00000002	CDS	16788263	16788329	+
GWHAAZE00000002	three_prime_UTR	16788330	16788330	+
GWHAAZE00000002	three_prime_UTR	16788803	16788893	+
GWHAAZE00000002	three_prime_UTR	16791565	16791612	+
GWHAAZE00000002	three_prime_UTR	16792443	16792501	+
GWHAAZE00000002	three_prime_UTR	16793873	16793948	+
GWHAAZE00000002	three_prime_UTR	16794046	16794093	+

Transcript Sequence
>GWHTAAZE005964 ATGGCTTTTAGGCGTAGTCTGGTTGTCAGAGCGAAACTTTATGCTCATCAACGATTTAGCCCTTCGAGTGCTTATATTCACCATGACAATGATAGTAATAAACGTCATTCTCTCGACGAGGATCTGAAAATCAACGCACTCATTCAAAGAGGATGTCTCGGGAGCAGAATTAGCAGTTTGGTAGGGTTTGGCGCTCCTTTTCGAGATCGAAGGTGTTCACAAATGGTTGTTCCGATGATAAGCAGTTTGTTTTTGGCTAAGATGTCAACTTCGATTGGTGAAGGTAATGATAAGATTGATTACATGAGTGATGTTGCGGATGTACTTGCGGATGAGACTGTGGAAGCAGTGGCTTCACAGGCTCCGGCTGTGAGTGAAGTGGCGGTTGCTGCTGCTGATTCATATTTTCCAGTTGCAGCCTTGCAGTACTTGATTGATGGTGTTCATAGTTTTGCTGGTTTAAATTGGAATATCTGCAACCAGGAACATGATGGTCATGGAATCAGTGGTAGAGGCATAAACGATGCCATCTAGGGTGGGCAAGCATAGCTTTAACAACTATTTTGATTCGAGGGATAACGGTTCCAATGTTGATTAATCAGCTCAAAGCTACTTCAAAACTGACACTTATGAGGCCACGCCTGGAAGAGATTAAGCAAGAGATGCAAGATAGGGGCATGAGTCCTACTGCTGTAGCTGAAGGTCAGCAGCGAATGTCACAGATATTCAAGGAGTACGGTGTTACTCCATGGACTCCGTTGAAGGGACTCCTCATCCAAGGTCCTGTTTTTGTCAGTTTTTTCCTTGCTATTGAAAACATGGTGGAAAAGGTACCATCTTTTCAAAGGGGTGGAGCA

Network for GWHGAAZE005956

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03217	yidC, spoIIIJ, OXA1, ccfA	Protein export	map03060
		Bacterial secretion system	map03070
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.108
	SRR3591706	second leaf	7.953
	SRR3591707	mature leaf	5.327
	SRR3591708	Shoot apex	13.604
	SRR3591709	Stem	7.345
	SRR3591710	White floral bud	11.758
	SRR3591711	White flower	7.423
	SRR3591712	Green floral bud	8.871
	SRR3591713	Yellow flower	2.526
SRP173429	SRR8316895	Juvenile bud stage	12.605
	SRR8316896	Juvenile bud stage	15.833
	SRR8316897	Juvenile bud stage	10.835
	SRR8316894	Third green stage	6.904
	SRR8316900	Third green stage	17.119
	SRR8316901	Third green stage	12.197
	SRR8316898	Complete white stage	5.081
	SRR8316899	Complete white stage	16.357
	SRR8316903	Complete white stage	12.488
	SRR8316902	Silver flowering stage	4.969
	SRR8316904	Silver flowering stage	6.386
	SRR8316905	Silver flowering stage	2.912
	SRR8316906	Gold flowering stage	8.490
	SRR8316907	Gold flowering stage	9.111
	SRR8316908	Gold flowering stage	7.533
SRP132670	SRR6706286	Control	18.877
	SRR6706287	Light intensity 50%	16.966
	SRR6706288	Light intensity 20%	17.456
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.336
	CNS0095593	Slightly white alabastrum(diploid) 2	8.454
	CNS0095594	Slightly white alabastrum(diploid) 3	8.262
	CNS0095595	Whole white alabastrum(diploid) 2	7.707
	CNS0095596	Whole white alabastrum(diploid) 3	6.058
	CNS0095597	Whole white alabastrum(diploid) 4	7.286
	CNS0095598	Silvery flower (diploied) 1	18.979
	CNS0095599	Silvery flower (diploied) 2	11.855
	CNS0095600	Silvery flower (diploied) 3	12.860
	CNS0095601	Golden flower (diploid) 1	13.897
	CNS0095602	Golden flower (diploid) 2	12.850
	CNS0095603	Golden flower (diploid) 3	11.915
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.016
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.820
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.922
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.556
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.110
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.933
	CNS0095610	Silvery flower (tetraploid) 1	9.372
	CNS0095611	Silvery flower (tetraploid) 2	10.495
	CNS0095612	Silvery flower (tetraploid) 3	7.770
	CNS0095613	Golden flower (tetraploid) 1	3.547
	CNS0095614	Golden flower (tetraploid) 2	6.387
	CNS0095615	Golden flower (tetraploid) 3	4.081
CRA001975	CRR073297	Stem 1	25.220
	CRR073298	Stem 2	22.655
	CRR073299	Stem 3	21.778
	CRR073300	Leaf 1	21.588
	CRR073301	Leaf 2	18.058
	CRR073302	Leaf 3	15.660
	CRR073303	Juvenile bud 1	13.995
	CRR073304	Juvenile bud 2	10.007
	CRR073305	Juvenile bud 3	12.052
	CRR073306	Third green 1	2.256
	CRR073307	Third green 2	3.584
	CRR073308	Third green 3	3.384
	CRR073309	Second white 1	1.604
	CRR073310	Second white 2	2.872
	CRR073311	Second white 3	1.722
	CRR073312	Silver flowering 1	1.912
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.934
	CRR073315	Gold flowering 1	9.753
	CRR073316	Gold flowering 2	11.967
	CRR073317	Gold flowering 3	7.787
	CRR073318	Tawny withering 1	6.668
	CRR073319	Tawny withering 2	6.675
	CRR073320	Tawny withering 3	10.500