Gene detail

Detail information of GWHGAAZE005964

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270595.3	1.8756E-158	PREDICTED: DNA primase small subunit [Vitis vinifera]
trEMBL	tr\|A0A061GD75\|A0A061GD75_THECC	2E-157	DNA primase {ECO:0000256\|RuleBase:RU003514}
TAIR10	AT5G41880.1	4E-95	DNA primases;DNA primases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	16955644	16960216	-
GWHAAZE00000002	mRNA	16955644	16960216	-
GWHAAZE00000002	exon	16960093	16960216	-
GWHAAZE00000002	exon	16958081	16958131	-
GWHAAZE00000002	exon	16957831	16958006	-
GWHAAZE00000002	exon	16957568	16957645	-
GWHAAZE00000002	exon	16957359	16957470	-
GWHAAZE00000002	exon	16956283	16956431	-
GWHAAZE00000002	exon	16956083	16956144	-
GWHAAZE00000002	exon	16955885	16956000	-
GWHAAZE00000002	exon	16955644	16955798	-
GWHAAZE00000002	CDS	16960093	16960216	-
GWHAAZE00000002	CDS	16958081	16958131	-
GWHAAZE00000002	CDS	16957831	16958006	-
GWHAAZE00000002	CDS	16957568	16957645	-
GWHAAZE00000002	CDS	16957359	16957470	-
GWHAAZE00000002	CDS	16956283	16956431	-
GWHAAZE00000002	CDS	16956083	16956144	-
GWHAAZE00000002	CDS	16955885	16956000	-
GWHAAZE00000002	CDS	16955644	16955798	-

Transcript Sequence
>GWHTAAZE005972 ATGACCAGAGAAGAAGACGCGAATGGAAGAGATGACATGCAAATTGATGAAATTGAGTCTGAGAGGAAGCCGGACACTGCTTTTCCCGACGAATTTAACTCTAATTACCTCAGACTCTATTACGGAAAGCTTTTCCCACACGCTGATATTTTCAAATGGATGTCATATGGAAATGATGGAAAGCATCCTGCATGTGACATGTCATATTTCGGGCGTAGAGAATTTTCTTTCACATTGGACAATGACATATATCTGAGGTTTCAGTCTTTCAATAGTGCATCTGAACTGGAAAATGCCATCAAAGAGAAGTGCCCTTTCAAAATAGACATTGGGCCTGTGTACAGTGTTGATCCTTCAAAAAGGCATGCCTATGCACAAGGCGGTGACAATGTTTTCACTCCGGTGGAGAGGGAGCTAGTTTTTGATATAGATATGTCAGATTATGATGATGTAAGATACTGTTGCTCAGGAGCTGATGTTTGCTTGGATTGCTGGCCGCTGATGACCGTTGCTGTTAAAGTGCTGGATGCTGCCCTCAGAGTGGCCGACGTGGTGTACATTGTTGGGTTTGTGACGGAAAAGCAAGAAGGTCGTACTGAAAATATTTCAAAAGTGAAAGTTCAGTTAATCTGGTTTGCTATTTCTGTAATAAATTCTGATGGTTTGAAATGCACTGCCACCAATCACCAGGGCAATGAAAATAGCCTTAAAAAAGTTTCTTTAGTGGGTGCTGCACTTCATCCTTTCCTTGCGAGATCTTATACTGACGTTTTGAGAGAATTCTTTGAAGAGAATTTGCTTTGCAGTCAAAAGTTACTTTCAAACGAGGAGCGATATGAGAAAATACTGGAGATGATTCCTGATGAATCTATAACTTCTGAGCTTCGGAGGAAGTGGCAAGATACCAGGCGCTCATCCGGTGCAAAGGAAGACATTAATGTTGTTCGATGGGAGCAATTAAAACATGTGCTTCAATCTGGGAAGCAAAAGGTACAATTTCCATTACAGGATAATCCTACTTAG

Network for GWHGAAZE005964

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01896.20	DNA_primase_S	141	181	1.60E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02684	PRI1	DNA replication	map03030

Gene Ontology

GO term	Ontology	Name
GO:0006269	biological_process	DNA replication, synthesis of RNA primer
GO:0003896	molecular_function	DNA primase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.281
	SRR3591706	second leaf	1.238
	SRR3591707	mature leaf	0.148
	SRR3591708	Shoot apex	16.442
	SRR3591709	Stem	3.747
	SRR3591710	White floral bud	2.262
	SRR3591711	White flower	2.315
	SRR3591712	Green floral bud	2.467
	SRR3591713	Yellow flower	0.805
SRP173429	SRR8316895	Juvenile bud stage	3.965
	SRR8316896	Juvenile bud stage	5.467
	SRR8316897	Juvenile bud stage	1.991
	SRR8316894	Third green stage	1.342
	SRR8316900	Third green stage	3.263
	SRR8316901	Third green stage	2.886
	SRR8316898	Complete white stage	1.435
	SRR8316899	Complete white stage	4.361
	SRR8316903	Complete white stage	1.543
	SRR8316902	Silver flowering stage	0.749
	SRR8316904	Silver flowering stage	0.932
	SRR8316905	Silver flowering stage	0.242
	SRR8316906	Gold flowering stage	1.332
	SRR8316907	Gold flowering stage	1.210
	SRR8316908	Gold flowering stage	1.216
SRP132670	SRR6706286	Control	2.423
	SRR6706287	Light intensity 50%	3.213
	SRR6706288	Light intensity 20%	3.854
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.768
	CNS0095593	Slightly white alabastrum(diploid) 2	2.024
	CNS0095594	Slightly white alabastrum(diploid) 3	3.262
	CNS0095595	Whole white alabastrum(diploid) 2	1.514
	CNS0095596	Whole white alabastrum(diploid) 3	1.615
	CNS0095597	Whole white alabastrum(diploid) 4	1.335
	CNS0095598	Silvery flower (diploied) 1	1.534
	CNS0095599	Silvery flower (diploied) 2	3.462
	CNS0095600	Silvery flower (diploied) 3	1.423
	CNS0095601	Golden flower (diploid) 1	2.075
	CNS0095602	Golden flower (diploid) 2	1.358
	CNS0095603	Golden flower (diploid) 3	0.796
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.133
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.766
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.148
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.730
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.019
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.883
	CNS0095610	Silvery flower (tetraploid) 1	1.803
	CNS0095611	Silvery flower (tetraploid) 2	1.074
	CNS0095612	Silvery flower (tetraploid) 3	1.091
	CNS0095613	Golden flower (tetraploid) 1	0.291
	CNS0095614	Golden flower (tetraploid) 2	0.390
	CNS0095615	Golden flower (tetraploid) 3	0.104
CRA001975	CRR073297	Stem 1	4.910
	CRR073298	Stem 2	3.957
	CRR073299	Stem 3	4.945
	CRR073300	Leaf 1	2.160
	CRR073301	Leaf 2	2.035
	CRR073302	Leaf 3	2.306
	CRR073303	Juvenile bud 1	1.712
	CRR073304	Juvenile bud 2	0.925
	CRR073305	Juvenile bud 3	2.175
	CRR073306	Third green 1	0.290
	CRR073307	Third green 2	0.590
	CRR073308	Third green 3	0.771
	CRR073309	Second white 1	0.626
	CRR073310	Second white 2	0.779
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.026
	CRR073313	Silver flowering 2	0.212
	CRR073314	Silver flowering 3	0.247
	CRR073315	Gold flowering 1	0.688
	CRR073316	Gold flowering 2	0.977
	CRR073317	Gold flowering 3	0.937
	CRR073318	Tawny withering 1	6.184
	CRR073319	Tawny withering 2	3.473
	CRR073320	Tawny withering 3	5.357