Detail information of GWHGAAZE005977


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002513599.11.1039E-42ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
Swissprottr|Q8S919|UBC5B_ORYSJ4E-43Ubiquitin-conjugating enzyme E2 5B
trEMBLtr|B9RIN0|B9RIN0_RICCO4E-43Ubiquitin-conjugating enzyme E2, putative {ECO:0000313|EMBL:EEF49002.1}
TAIR10AT5G41700.33E-34ubiquitin conjugating enzyme 8

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1723167617234066-
GWHAAZE00000002mRNA1723167617234066-
GWHAAZE00000002exon1723167617231836-
GWHAAZE00000002exon1723399717234066-
GWHAAZE00000002CDS1723399717234066-
GWHAAZE00000002CDS1723167617231836-
Transcript Sequence

Network for GWHGAAZE005977

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con5707.50E-21
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K06689UBE2D, UBC4, UBC5 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
MAPK signaling pathway - flymap04013
Toll and Imd signaling pathwaymap04624

Gene Ontology

GO term OntologyName

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE005977.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3050100150200250300350400450Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf252.974
SRR3591706second leaf110.764
SRR3591707mature leaf151.998
SRR3591708Shoot apex171.869
SRR3591709Stem279.375
SRR3591710White floral bud181.134
SRR3591711White flower225.640
SRR3591712Green floral bud165.238
SRR3591713Yellow flower181.495
SRP173429 SRR8316895Juvenile bud stage 108.903
SRR8316896Juvenile bud stage 153.938
SRR8316897Juvenile bud stage 71.957
SRR8316894Third green stage 61.997
SRR8316900Third green stage 218.593
SRR8316901Third green stage 225.332
SRR8316898Complete white stage 141.171
SRR8316899Complete white stage 317.143
SRR8316903Complete white stage 179.337
SRR8316902Silver flowering stage142.971
SRR8316904Silver flowering stage156.860
SRR8316905Silver flowering stage92.880
SRR8316906Gold flowering stage 382.470
SRR8316907Gold flowering stage 361.827
SRR8316908Gold flowering stage 350.970
SRP132670SRR6706286Control384.899
SRR6706287Light intensity 50%342.136
SRR6706288Light intensity 20%329.603
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1147.857
CNS0095593Slightly white alabastrum(diploid) 2186.207
CNS0095594Slightly white alabastrum(diploid) 3131.687
CNS0095595Whole white alabastrum(diploid) 2139.720
CNS0095596Whole white alabastrum(diploid) 3142.554
CNS0095597Whole white alabastrum(diploid) 4135.828
CNS0095598Silvery flower (diploied) 1166.309
CNS0095599Silvery flower (diploied) 2180.733
CNS0095600Silvery flower (diploied) 3245.744
CNS0095601Golden flower (diploid) 1194.674
CNS0095602Golden flower (diploid) 2226.843
CNS0095603Golden flower (diploid) 3221.666
CNS0095604Slightly white alabastrum(tetraploid) 1148.721
CNS0095605Slightly white alabastrum(tetraploid) 2133.877
CNS0095606Slightly white alabastrum(tetraploid) 3204.261
CNS0095607Whole white alabastrum(tetraploid) 1106.390
CNS0095608Whole white alabastrum(tetraploid) 2124.006
CNS0095609Whole white alabastrum(tetraploid) 3153.123
CNS0095610Silvery flower (tetraploid) 1284.152
CNS0095611Silvery flower (tetraploid) 2245.012
CNS0095612Silvery flower (tetraploid) 3245.775
CNS0095613Golden flower (tetraploid) 1219.341
CNS0095614Golden flower (tetraploid) 2272.492
CNS0095615Golden flower (tetraploid) 3261.696
CRA001975CRR073297Stem 1133.358
CRR073298Stem 2134.389
CRR073299Stem 3185.538
CRR073300Leaf 1182.535
CRR073301Leaf 2204.233
CRR073302Leaf 3226.648
CRR073303Juvenile bud 1219.611
CRR073304Juvenile bud 2250.803
CRR073305Juvenile bud 3230.791
CRR073306Third green 1228.087
CRR073307Third green 2265.771
CRR073308Third green 3212.681
CRR073309Second white 1270.964
CRR073310Second white 2185.114
CRR073311Second white 3138.834
CRR073312Silver flowering 1167.508
CRR073313Silver flowering 2208.551
CRR073314Silver flowering 3145.406
CRR073315Gold flowering 1206.678
CRR073316Gold flowering 2189.654
CRR073317Gold flowering 3201.783
CRR073318Tawny withering 1278.359
CRR073319Tawny withering 2284.390
CRR073320Tawny withering 3222.568