Gene detail

Detail information of GWHGAAZE005989

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010656962.1	PREDICTED: transcription initiation factor TFIID subunit 1 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q8LRK9\|TAF1_ARATH	Transcription initiation factor TFIID subunit 1
trEMBL	tr\|F6H596\|F6H596_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47267.1}
TAIR10	AT1G32750.1	HAC13 protein (HAC13)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	17437462	17457272	+
GWHAAZE00000002	mRNA	17437462	17457272	+
GWHAAZE00000002	exon	17437462	17437507	+
GWHAAZE00000002	exon	17438640	17438746	+
GWHAAZE00000002	exon	17439837	17439899	+
GWHAAZE00000002	exon	17440081	17440126	+
GWHAAZE00000002	exon	17441425	17441580	+
GWHAAZE00000002	exon	17442229	17442347	+
GWHAAZE00000002	exon	17443101	17443269	+
GWHAAZE00000002	exon	17443521	17444469	+
GWHAAZE00000002	exon	17446553	17446755	+
GWHAAZE00000002	exon	17446870	17447107	+
GWHAAZE00000002	exon	17447288	17447624	+
GWHAAZE00000002	exon	17447773	17447874	+
GWHAAZE00000002	exon	17449001	17449210	+
GWHAAZE00000002	exon	17449401	17449493	+
GWHAAZE00000002	exon	17450378	17450584	+
GWHAAZE00000002	exon	17450974	17451180	+
GWHAAZE00000002	exon	17453092	17453365	+
GWHAAZE00000002	exon	17453453	17453560	+
GWHAAZE00000002	exon	17454110	17454258	+
GWHAAZE00000002	exon	17454397	17454516	+
GWHAAZE00000002	exon	17454707	17454763	+
GWHAAZE00000002	exon	17454869	17455557	+
GWHAAZE00000002	exon	17455741	17455861	+
GWHAAZE00000002	exon	17456910	17457272	+
GWHAAZE00000002	CDS	17437462	17437507	+
GWHAAZE00000002	CDS	17438640	17438746	+
GWHAAZE00000002	CDS	17439837	17439899	+
GWHAAZE00000002	CDS	17440081	17440126	+
GWHAAZE00000002	CDS	17441425	17441580	+
GWHAAZE00000002	CDS	17442229	17442347	+
GWHAAZE00000002	CDS	17443101	17443269	+
GWHAAZE00000002	CDS	17443521	17444469	+
GWHAAZE00000002	CDS	17446553	17446755	+
GWHAAZE00000002	CDS	17446870	17447107	+
GWHAAZE00000002	CDS	17447288	17447624	+
GWHAAZE00000002	CDS	17447773	17447874	+
GWHAAZE00000002	CDS	17449001	17449210	+
GWHAAZE00000002	CDS	17449401	17449493	+
GWHAAZE00000002	CDS	17450378	17450584	+
GWHAAZE00000002	CDS	17450974	17451180	+
GWHAAZE00000002	CDS	17453092	17453365	+
GWHAAZE00000002	CDS	17453453	17453560	+
GWHAAZE00000002	CDS	17454110	17454258	+
GWHAAZE00000002	CDS	17454397	17454516	+
GWHAAZE00000002	CDS	17454707	17454763	+
GWHAAZE00000002	CDS	17454869	17455557	+
GWHAAZE00000002	CDS	17455741	17455861	+
GWHAAZE00000002	CDS	17456910	17457272	+

Transcript Sequence
>GWHTAAZE005997 ATGGGGTACGAATCTGGTAGCACGTCCCAGGACGGCAGGAATGAAGATGATGATGAAGAATATGATGAAGGTGGTGGTAGCAATGGTCTTTTGGGGTTCATGTTTGGAAATGTTGATGGCTCTGGTGACCTTGACATTGATTACCTTGATCAGGATGCAAAGGAGCATCTTGGTGCACTGGCTGACAAGCTTGGTCCATCATTGACCGATATACATTTATCAGTAAAATCATCACAAACATCTGTTGATGCTGCGGAACAAGATTATGATGAGAAGGCTGAAGATGCAGTTGATTATGAAGACATCGATGAGCAATACGAGGGTCCGGAGACTCAAGCTGTCACTGAGGAGGACTATTTATTGCCAAAAAAGGACTTTTTTTCTGCTGAAGCATCAATGGCTACTTTTGATAGAACTTGTGAGGATGGTGATAATCTTGTAGTTCTTCCTCACGTGGACAATTCTCTGGAAGATGGCCCAACTATTGCCACTTTTGAAGCAGAAAATTTGGCTGCTGAGTTGGAGGATTCCCAAGAGGAGGAACCAAATAAATTGGAAGAGGAATTAGATTTTAAAAGTCCTCCACCACTTCCTATTCTATGCATAGAAGATGGGATGGCGATATTACGTTTTTCTGAAATTTTTGGTATTCACGAGCCTTTGAAGAAAGCCGAGAAGAGGGCCCATAGGTATTCTGTTCCTAAAGAGAAGTACAGGTTGATGGACGCTTCTGATATTGTTGAAGAGGATGAAGAGGCATTTTTAAAGGGCTCTGGCGAGGGTTTTTCTTTGAGAAAGACACGCATAATTCAAGATGATGTATTGGAATTTAAGGATGATGATTTAGAACCCATAAAACCTTTGAAAGAGGATATGTCATTAGAAGTTGACGAGCAAAGGAAAGACTCTTGTCGTAGTGCTGAACCAATGAAAGAGGATATATCATTAGATCAGCCAGCAGAATGGGTCCCATCATTTTGTCCCGAGATTTACCCTCTTGATCAGCAGGACTGGGAAGATAGAATTATTTGGGATAATTCTCCTGCTTTGAGTGACAATGCTGCAGAGAGTTCCGAGATCTCTGGACCTGACCCTGAAGGTTTGGTTAATGAACAATCAGATTTGGATTCTGGGCAAGAAAAAATACATCCAACGGTGCATATGGAACCTGACGAGAAAGATCATGGTCTTTTTTTGCGTAGTTGTCCTGTTTCTCTGGAATCCTTTGGTTCAAGAAAATTGTCAACAGAATCGGATTTACCCTCCAAAAGTAGATATCATCCCCAACTTTTGAGGTTAGAGTCTCGGTTGGAAATGGACGGTCCAAATTGCTCAGATGCTATGAAGGATAGCGCTGCTGAAAAGATTCGTCATAGTGATGCTATTCGGCGCTTTAGCAAGCTTAATTTGCAAAATAGAGATGTACCGGAAGGATCTTGGTTAGATAAAATAATTTGGGACCCACATCAGTCTATTACACAATCAAAACTAATTCTTGATCTTCAGGACGAGCAAATGCTTTTTGAAATATTAGACGACAAAGATGGTCAATATCTTCAGGTTCATGCAGGGGCCATGATCATAACTCGCTCTGTGAAGTCCAACGGTGGTGATTCTGTTGAGCTACATAGCCATGGAGCTCCATCTGGGGGCAGCAAGGATATTGCAAATTTTCACCGACCGAAAGCATTATGGTATCCCCATGATAACGAGGTCGCACTCAAGACACAAGGGAAGTTACCTACACAAGGACCAATGAAAATTATATTGAAGAGCCTGGGAGGCAAAGGGAGTAAACTTCACGTGGATTCAGAGGAGACCATTTCTTCTGTCAAATCAAAAGCCTCAAAAAAGCTCGATTTTAAACCATTTGAACCAGTAAAAATATTTTATTCTGGGAAGGAGCTTGAAGACACTAAATCTCTAGCTGTACAAAATGTTCGACCAAACTCCTTGCTGCATCTTGTTCGTACAAAAATACATCTGTTGCCAAGAGCACAAAAACTTCCTGGTGAGAACAAGTCTTTGCGTCCTCCTGGAGCTTTTAAGAAGAAATCTGATCTTTCTGTAAAGGACGGCCATGTTTTCCTAATGGAGTATTGTGAGGAAAGACCTTTATTCCTAGGAAATGCTGGGATGGGTGCTAGATTGTGCACTTACTACCAGAAATCTGCCCCGGGGGATCAAACTGGTACATTGTTGCGCAGTGGAAGTAACAGTTTGGGGAATGTTCAAACACTTGATCCTGCTGATAAATCCCCTTTCCTTGGAGATATAAAAGCTGGTTGCAGCCAATCATGCCTTGAAACTAACATGTATAGGGCTCCCATATATCAGCATAAAGTGTCAACAACTGACTATTTGTTGGTTCGATCTGCAAAGGGAAAGCTTTCTATTAGACGCATCGACAGGATAGATGTTGTTGGACAACAGATGGACCCTAACCGGTACCATAGTGGTAACCAGATTGTACCATTCCCTGTGGGGAACAACTCACCGGCAATACCATGCCAGATGACTGGGAAGAACAGTGCGGAGCCTCACATGGAGGTAATGTCTCCTGGTTCCAAAAATGTTCAGACCTACATTATGAACAGGCTATTGGTGTATATATATCGTGAGTTTCGTAATGTGGAAAAGCGTGGCTTGCTTCCTTCCATACGTGCAGATGAGTTGTCAGCTCAGTTTCCTAGTTTCTCTGAAGCCTTTCTTCGGAAAAGGTTAAAGCACTGTTCTTATTTACAGAAGGGATCGAATGGGCAGCTACTTTGGTTTATGAGGCGCAATTTTCGCATTCCCTTGGAGGAAGAACTGAGAAGGATGGTAACACCAGAAAACGTCTGCGCATATGAAAGCATGCAAGCTGGTCAGTACAGGCTCAAACGATTAGGAATTACGAGGCTGATTAATCCTACTGGCCTTTCATCTGCAATGAATCAGCTGCCTGATGAAGCGATTGCTTTAGCTGCTGCATCGCACATCGAGAGGGAACTCCAGATTACTCCGTGGAACTTGAGTAGCAATTTTGTTGCCTGTACAAATCAGGACAGAGAAAATATTGAGCGTCTGGAAATTACTGGTGTTGGTGATCCATCTGGGCGAGGTCTTGGTTTCAGTTATGTCCGCGCTGCTCCAAAGGCACCGGTTTCAAATGCAATGGTGAAGAAAAAAGCAGCTGTTAATCGAGGAGGTTCAACTGTAACGGGAACGGATGCTGATCTGCGTAGGTTGAGCATGGAAGCTGCGCGAGAGGTTCTTCTTAAATTCAATGTTCCAGAGGAGCAGATTGCGAAACAAACTAGATGGCATCGTATTGCTATGATTCGGAAGCTTTCAAGTGAGCAAGCTGCATCAGGAGTCAAAGTCGACCCAACAACAATCAGTAAGTATGCTCGTGGGCAGAGAATGTCCTTTTTGCAGCTTCAGCAGCAAACCAGAGAAAAGTGTCAAGAAATTTGGGATCGGCAATTTCAAAGTCTCTCTGCAATCGATGGTGAAGACATCGAGAGTGACACTGAAGCACACAGTGTCAAGGGGCTAAAGATGAGAAGGCGACCTTCCCAAGTCCAGGCAGAGGAGGAAATTGAAGATGAGGCAGCTGAAGCTGCAGAATTGTGCCGGATGCTCATGGATGGATTGGCTCAAAGACCACAATTAAGTTACAGTTTAGAAAATACCAACCGGGTGAAGAAAACTACTCCGATTGTCAAGCAAATCACGGGCGTCAGCCAACCTGATGGGTCATTTGCATCTAAAGAGAATGCCATTAAAGAGCCAAAGGAGGAGGAGAGCTTTCCTAGTAGAAAAAACTTTCCTGGAAAGATGAAAGCTAAGAAGAAGAATGACATTGAGCAAATGGGTTTACTCAAAAAGAAAGTTAAAATATTGGGAGATGGTATTAAGATTGTCAAGGAAAAGAAATCAGCAAGAGAAAGTTTTGTTTGTGGAGCCTGCGGTCAGCTTGGTCACATGAGGACCAACAAGAATTGCCCCAAGTATGGAGAAGATTCAGAAATCCAAGTTGAAACTCGAGACACAGAAAAGGCATCAGGAAAATCTACTTCTTTGGATATCACACCGCAGCCCCAGCCGAAACCTATGTTAAAGAAGATAATACAAAAGAGTGCAACAAAAATTGCAGTGGTAGAAGCTTCCGAGGAAGACAAGTCTAGTTCAAAGGCAAAAGTTCTAAAGGTCAAATGTGGGTCCACTGATAAGTTCCCCGATAAAGTCACCCCCGCCACCTCACAGATTTCTGAAAGACCTGTAACATCAGATACCGAGACTGCAAACAAGTCTTCAATTAAAGTTAATAGAATAGTGTTTTCCAACAAGGTGAAACCCGATGATGTTCAGGTTGAGTCTCAAAAGCCCTCTATTGTGATAAAGCCACCAACAGAGACAGACAGAGATCAGCCTCGAAAGAAAATCATAATAAAGCGACCAAAAGAAGTTGATTTGGACCAGCTCAGTCAAGAAGGAAGCACCGGGCTCGAGTATAGGAAGACGAAAAAAATTGTTGAACTTTCGAGTTTTCAGAAACATAACGAAGAGGCAGCAAAGCGAAAAAGTAGAGAGGACAAACGATTTTGGGAAGAGAAAGAAAAAAGGAGAACTGTGGAGAGACAGAGAGAAGAGTCAGCAAGGAGAAATGATAGACGAATGGTGGAAAGGGAAACGATGGGGAAGAGGAGGCCGGCAGCACTTGAAGTGGGAAGGTTTAGTGCTGACTATGCCCCCCCGCCCACAAAGCGCCGCAGAGGGGGAGAGGTTGGGTTGGCTAACATATTAGAGAGCATTGTGGAGACACTGAAGGAGAGGTACGAGGTGTCTTACCTATTCTTGAAACCGGTGTCGAAGAAGGAAGCACCAGACTATTTGGACATAATAAAGCACCCAATGGATCTGTCGACGATAAAGGAGAAGGTGAGGAGATTGGAATACAAGAGCAGAGAGGAGTTCAGGCACGACGTTTGGCAGATCACTTACAATGCTCACAGATACAATGATGGACGAAACCCAGGGATTCCTCCCCTTGCTGATCAGCTTTTGGAGCTCTGTGACTACTTGTTGAGTGAAAATGATTCTAGCTTGACTGAAGCTGAAGGGGGCATTGAATTTACAGATATCTAA

Network for GWHGAAZE005989

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09247.12	TBP-binding	18	61	1.10E-08
PF12157.9	DUF3591	552	812	2.60E-49
PF00240.24	ubiquitin	588	658	1.30E-09
PF12157.9	DUF3591	846	1107	3.70E-70
PF15288.7	zf-CCHC_6	1315	1334	8.10E-05
PF00439.26	Bromodomain	1597	1672	5.80E-19

Protein Sequence

>GWHPAAZE005993
MGYESGSTSQDGRNEDDDEEYDEGGGSNGLLGFMFGNVDGSGDLDIDYLDQDAKEHLGALADKLGPSLTDIHLSVKSSQTSVDAAEQDYDEKAEDAVDYEDIDEQYEGPETQAVTEEDYLLPKKDFFSAEASMATFDRTCEDGDNLVVLPHVDNSLEDGPTIATFEAENLAAELEDSQEEEPNKLEEELDFKSPPPLPILCIEDGMAILRFSEIFGIHEPLKKAEKRAHRYSVPKEKYRLMDASDIVEEDEEAFLKGSGEGFSLRKTRIIQDDVLEFKDDDLEPIKPLKEDMSLEVDEQRKDSCRSAEPMKEDISLDQPAEWVPSFCPEIYPLDQQDWEDRIIWDNSPALSDNAAESSEISGPDPEGLVNEQSDLDSGQEKIHPTVHMEPDEKDHGLFLRSCPVSLESFGSRKLSTESDLPSKSRYHPQLLRLESRLEMDGPNCSDAMKDSAAEKIRHSDAIRRFSKLNLQNRDVPEGSWLDKIIWDPHQSITQSKLILDLQDEQMLFEILDDKDGQYLQVHAGAMIITRSVKSNGGDSVELHSHGAPSGGSKDIANFHRPKALWYPHDNEVALKTQGKLPTQGPMKIILKSLGGKGSKLHVDSEETISSVKSKASKKLDFKPFEPVKIFYSGKELEDTKSLAVQNVRPNSLLHLVRTKIHLLPRAQKLPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLFLGNAGMGARLCTYYQKSAPGDQTGTLLRSGSNSLGNVQTLDPADKSPFLGDIKAGCSQSCLETNMYRAPIYQHKVSTTDYLLVRSAKGKLSIRRIDRIDVVGQQMDPNRYHSGNQIVPFPVGNNSPAIPCQMTGKNSAEPHMEVMSPGSKNVQTYIMNRLLVYIYREFRNVEKRGLLPSIRADELSAQFPSFSEAFLRKRLKHCSYLQKGSNGQLLWFMRRNFRIPLEEELRRMVTPENVCAYESMQAGQYRLKRLGITRLINPTGLSSAMNQLPDEAIALAAASHIERELQITPWNLSSNFVACTNQDRENIERLEITGVGDPSGRGLGFSYVRAAPKAPVSNAMVKKKAAVNRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEQIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQFQSLSAIDGEDIESDTEAHSVKGLKMRRRPSQVQAEEEIEDEAAEAAELCRMLMDGLAQRPQLSYSLENTNRVKKTTPIVKQITGVSQPDGSFASKENAIKEPKEEESFPSRKNFPGKMKAKKKNDIEQMGLLKKKVKILGDGIKIVKEKKSARESFVCGACGQLGHMRTNKNCPKYGEDSEIQVETRDTEKASGKSTSLDITPQPQPKPMLKKIIQKSATKIAVVEASEEDKSSSKAKVLKVKCGSTDKFPDKVTPATSQISERPVTSDTETANKSSIKVNRIVFSNKVKPDDVQVESQKPSIVIKPPTETDRDQPRKKIIIKRPKEVDLDQLSQEGSTGLEYRKTKKIVELSSFQKHNEEAAKRKSREDKRFWEEKEKRRTVERQREESARRNDRRMVERETMGKRRPAALEVGRFSADYAPPPTKRRRGGEVGLANILESIVETLKERYEVSYLFLKPVSKKEAPDYLDIIKHPMDLSTIKEKVRRLEYKSREEFRHDVWQITYNAHRYNDGRNPGIPPLADQLLELCDYLLSENDSSLTEAEGGIEFTDI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03125	TAF1	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.117
	SRR3591706	second leaf	10.932
	SRR3591707	mature leaf	15.365
	SRR3591708	Shoot apex	13.811
	SRR3591709	Stem	21.422
	SRR3591710	White floral bud	20.752
	SRR3591711	White flower	25.317
	SRR3591712	Green floral bud	14.239
	SRR3591713	Yellow flower	26.066
SRP173429	SRR8316895	Juvenile bud stage	8.518
	SRR8316896	Juvenile bud stage	12.378
	SRR8316897	Juvenile bud stage	6.048
	SRR8316894	Third green stage	5.412
	SRR8316900	Third green stage	11.656
	SRR8316901	Third green stage	11.376
	SRR8316898	Complete white stage	3.591
	SRR8316899	Complete white stage	10.507
	SRR8316903	Complete white stage	10.560
	SRR8316902	Silver flowering stage	7.013
	SRR8316904	Silver flowering stage	13.693
	SRR8316905	Silver flowering stage	5.754
	SRR8316906	Gold flowering stage	19.078
	SRR8316907	Gold flowering stage	17.961
	SRR8316908	Gold flowering stage	19.502
SRP132670	SRR6706286	Control	11.351
	SRR6706287	Light intensity 50%	11.624
	SRR6706288	Light intensity 20%	11.710
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.749
	CNS0095593	Slightly white alabastrum(diploid) 2	8.998
	CNS0095594	Slightly white alabastrum(diploid) 3	11.193
	CNS0095595	Whole white alabastrum(diploid) 2	8.892
	CNS0095596	Whole white alabastrum(diploid) 3	6.922
	CNS0095597	Whole white alabastrum(diploid) 4	9.698
	CNS0095598	Silvery flower (diploied) 1	13.510
	CNS0095599	Silvery flower (diploied) 2	11.230
	CNS0095600	Silvery flower (diploied) 3	17.996
	CNS0095601	Golden flower (diploid) 1	13.596
	CNS0095602	Golden flower (diploid) 2	22.190
	CNS0095603	Golden flower (diploid) 3	21.410
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.958
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.352
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.586
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.425
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.705
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.693
	CNS0095610	Silvery flower (tetraploid) 1	24.265
	CNS0095611	Silvery flower (tetraploid) 2	21.208
	CNS0095612	Silvery flower (tetraploid) 3	17.258
	CNS0095613	Golden flower (tetraploid) 1	14.777
	CNS0095614	Golden flower (tetraploid) 2	21.224
	CNS0095615	Golden flower (tetraploid) 3	21.770
CRA001975	CRR073297	Stem 1	17.212
	CRR073298	Stem 2	14.388
	CRR073299	Stem 3	9.560
	CRR073300	Leaf 1	14.426
	CRR073301	Leaf 2	11.578
	CRR073302	Leaf 3	5.696
	CRR073303	Juvenile bud 1	9.878
	CRR073304	Juvenile bud 2	5.719
	CRR073305	Juvenile bud 3	10.648
	CRR073306	Third green 1	3.649
	CRR073307	Third green 2	2.707
	CRR073308	Third green 3	4.747
	CRR073309	Second white 1	2.113
	CRR073310	Second white 2	6.821
	CRR073311	Second white 3	6.235
	CRR073312	Silver flowering 1	4.911
	CRR073313	Silver flowering 2	4.333
	CRR073314	Silver flowering 3	5.130
	CRR073315	Gold flowering 1	3.500
	CRR073316	Gold flowering 2	8.824
	CRR073317	Gold flowering 3	1.120
	CRR073318	Tawny withering 1	9.012
	CRR073319	Tawny withering 2	10.858
	CRR073320	Tawny withering 3	7.765