Gene detail

Detail information of GWHGAAZE005994

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009630287.1	0	PREDICTED: uncharacterized protein LOC104120257 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SZ67\|WRK19_ARATH	1E-65	Probable WRKY transcription factor 19
trEMBL	tr\|A0A068UUX5\|A0A068UUX5_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_62 {ECO:0000313\|EMBL:CDP12102.1}
TAIR10	AT1G64140.1	6E-145	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	17515853	17517328	+
GWHAAZE00000002	mRNA	17515853	17517328	+
GWHAAZE00000002	exon	17515853	17516933	+
GWHAAZE00000002	exon	17516964	17517328	+
GWHAAZE00000002	CDS	17515853	17516933	+
GWHAAZE00000002	CDS	17516964	17517328	+

Transcript Sequence
>GWHTAAZE006002 ATGGTTGATCTCGAGTTGAGTCTCTCTACTGGGCCAGCCGAATCTGATATCACTACTGTTCATCCAATCTCCAGCCAACCTCGAAATGTTGCTAACATTCTGGTTCCAGCTGCTGGAACTTTTCCTCCATTGCAAAATTCACCAACCTCAGCTACTAGTTACTTCCTTAATGAAATCAAGGCTGCCCCGGTGGGTCCGGCCCGTTCTGCAAGCATATTAACAACACCAAAAAGCTCTGTCACCTCTACTTCTGAATTCACTCAGCGCAGCACTAGTGCAAAGACATGCCAGTTTATTGGGTGTGGAAAGGGAGCAAGAGGTGCTTCTGGCCTTTGCATTGCCCACGGTGGGGGCCGGAGATGCCAGAAACCCGGTTGCCACAAAGGAGCCGAGGGCCGAACCGCGTACTGCAAGGCCCATGGGGGTGGTCGGCGTTGCGAATTCCTAGGTTGTACTAAGAGTGCAGAAGGACGTACAGATTACTGTATCGCCCATGGTGGTGGCCGGAGATGCAGCCATGAGGGTTGCACTCGAGCCGCCCGGGGAAAATCTGGCTTGTGCATCCGGCATGGTGGAGGCAAGAGGTGCCAGAAAGATAATTGTACGAAGAGTGCTGAAGGACTCTCTGGTCTCTGCATTTCGCATGGTGGAGGCCGGAGGTGTCAGTATCCTGAATGCACAAAAGGGGCTCAAGGAAGCACAATGTTTTGCAAGGCACACGGTGGTGGTAAACGGTGCACGTTTGAGGGGTGCACCAAGGGTGCGGAAGGCAGCACCCCTTTCTGCAAGGGGCACGGTGGAGGAAAAAGGTGCGCATATAGAGGTGGAGGGGCTTGTCCGAAGAGTGTCCATGGTGGGACTCTTTTCTGCGTGGCACACGGGGGTGGTAAGAGGTGTGCTGTAGCAGAGTGCACCAAGAGTGCAAGGGGGCGGACCGATTATTGTGTCCGGCACGGTGGGGGCAAGAGGTGTAAATTCGAAGGGTGTAGCAAAAGCGCACAAGGGAGCACTGACTTTTGTAAGGCACATGGGGGAGGGAAGAGATGCTCATGGGGCCAACCGGGCTTGGAATTGGGGAAAGGGAAAACTGGGTTGTGCACGTCCCACGGTGCACTGGTGCAGGACAAGCGGGTTCATGGGGGTGCCACCTTAGGTGTTTTGGTGGACTCAAACCCTAGAAAACCGGAGAAGATGAAGAATGATTTTGATGCAAAGAATAACCAGGATATGGTTATCGATGTTATGAATATGGATAACAGTTTTGGGACGTCAGCAGGGTGCACCGGTTCTGTTTGGAAACATTTTGGAGTTGAGCAGTCGTCAGATGAGGTACCAGAAGGGAGGGTGCATGGAGGAAGTTTGATTGCCTTGTTGGCGGCTGGTTCCACTCGCAGCAGCAGCAAAAATACAATTGGCAGGCCATCTGAGCCGAGAAATATTACATGA

Network for GWHGAAZE005994

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	64.104
	SRR3591706	second leaf	30.205
	SRR3591707	mature leaf	95.456
	SRR3591708	Shoot apex	41.535
	SRR3591709	Stem	129.164
	SRR3591710	White floral bud	55.241
	SRR3591711	White flower	65.833
	SRR3591712	Green floral bud	48.237
	SRR3591713	Yellow flower	62.777
SRP173429	SRR8316895	Juvenile bud stage	21.980
	SRR8316896	Juvenile bud stage	28.306
	SRR8316897	Juvenile bud stage	11.290
	SRR8316894	Third green stage	14.218
	SRR8316900	Third green stage	38.623
	SRR8316901	Third green stage	37.241
	SRR8316898	Complete white stage	16.455
	SRR8316899	Complete white stage	61.850
	SRR8316903	Complete white stage	32.332
	SRR8316902	Silver flowering stage	20.170
	SRR8316904	Silver flowering stage	23.214
	SRR8316905	Silver flowering stage	11.301
	SRR8316906	Gold flowering stage	44.731
	SRR8316907	Gold flowering stage	52.163
	SRR8316908	Gold flowering stage	50.897
SRP132670	SRR6706286	Control	71.115
	SRR6706287	Light intensity 50%	65.286
	SRR6706288	Light intensity 20%	62.481
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.186
	CNS0095593	Slightly white alabastrum(diploid) 2	35.354
	CNS0095594	Slightly white alabastrum(diploid) 3	29.279
	CNS0095595	Whole white alabastrum(diploid) 2	27.565
	CNS0095596	Whole white alabastrum(diploid) 3	22.158
	CNS0095597	Whole white alabastrum(diploid) 4	27.710
	CNS0095598	Silvery flower (diploied) 1	60.158
	CNS0095599	Silvery flower (diploied) 2	48.191
	CNS0095600	Silvery flower (diploied) 3	67.821
	CNS0095601	Golden flower (diploid) 1	66.809
	CNS0095602	Golden flower (diploid) 2	85.256
	CNS0095603	Golden flower (diploid) 3	83.494
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.981
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.932
	CNS0095606	Slightly white alabastrum(tetraploid) 3	78.280
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.163
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.793
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.684
	CNS0095610	Silvery flower (tetraploid) 1	82.189
	CNS0095611	Silvery flower (tetraploid) 2	66.158
	CNS0095612	Silvery flower (tetraploid) 3	44.421
	CNS0095613	Golden flower (tetraploid) 1	68.777
	CNS0095614	Golden flower (tetraploid) 2	89.911
	CNS0095615	Golden flower (tetraploid) 3	48.397
CRA001975	CRR073297	Stem 1	31.139
	CRR073298	Stem 2	31.618
	CRR073299	Stem 3	34.676
	CRR073300	Leaf 1	39.615
	CRR073301	Leaf 2	38.842
	CRR073302	Leaf 3	29.821
	CRR073303	Juvenile bud 1	39.462
	CRR073304	Juvenile bud 2	24.733
	CRR073305	Juvenile bud 3	58.961
	CRR073306	Third green 1	28.361
	CRR073307	Third green 2	22.651
	CRR073308	Third green 3	27.128
	CRR073309	Second white 1	33.595
	CRR073310	Second white 2	25.076
	CRR073311	Second white 3	28.114
	CRR073312	Silver flowering 1	25.747
	CRR073313	Silver flowering 2	29.949
	CRR073314	Silver flowering 3	24.803
	CRR073315	Gold flowering 1	11.245
	CRR073316	Gold flowering 2	14.265
	CRR073317	Gold flowering 3	11.842
	CRR073318	Tawny withering 1	41.932
	CRR073319	Tawny withering 2	32.833
	CRR073320	Tawny withering 3	36.480