Gene detail

Detail information of GWHGAAZE005995

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007209903.1	hypothetical protein PRUPE_ppa004162mg [Prunus persica]
Swissprot	tr\|Q42479\|CDPK3_ARATH	Calcium-dependent protein kinase 3
trEMBL	tr\|M5WBH1\|M5WBH1_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ11102.1}
TAIR10	AT4G23650.1	calcium-dependent protein kinase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	17521917	17526858	+
GWHAAZE00000002	mRNA	17521917	17526858	+
GWHAAZE00000002	exon	17521917	17522403	+
GWHAAZE00000002	exon	17525148	17525291	+
GWHAAZE00000002	exon	17525695	17525847	+
GWHAAZE00000002	exon	17525924	17526039	+
GWHAAZE00000002	exon	17526146	17526313	+
GWHAAZE00000002	exon	17526412	17526539	+
GWHAAZE00000002	exon	17526690	17526858	+
GWHAAZE00000002	CDS	17521917	17522403	+
GWHAAZE00000002	CDS	17525148	17525291	+
GWHAAZE00000002	CDS	17525695	17525847	+
GWHAAZE00000002	CDS	17525924	17526039	+
GWHAAZE00000002	CDS	17526146	17526313	+
GWHAAZE00000002	CDS	17526412	17526539	+
GWHAAZE00000002	CDS	17526690	17526858	+

Transcript Sequence
>GWHTAAZE006003 ATGGAGGATGTGCGCTCCACCTACATTTTTGGGCGAGAACTCGGCCGGGGCCAATTCGGGGTGACATACCTCGTCACTCACAAAACCACGCGAGAGCAATTCGCGTGCAAGTCAATCGCCACCAGAAAACTCATCAACAAGGACGATGTTGAAGATGTCCGTCGAGAAGTACAGATCATGCACCACCTCACCGGTCACCGAAATATAGTCGAGCTTAAAGGCGCCTACGAGGATCGCCACTCTGTAAACCTGGTTATGGAGCTCTGCGCTGGCGGTGAGCTGTTCGATCGGATCATCGCCAAGGGGCATTACTCCGAACGTGCTGCGGCCGTGCTCTGCCGACAGATGGTAACCGTGGTGCATAATTGCCATTCGATGGGGGTGATGCATCGGGATTTGAAGCCTGAGAATTTTCTACTGTTGAGTACTGATGAGGACTCGCCGTTGAAAGCTACTGACTTTGGTCTTTCAGTGTTTTTCAAACCAGGAGATGTATTTAAAGATCTTGTTGGAAGTGCATATTATGTGGCTCCTGAAGTGCTGCGCCGAAATTATGGGGCTGAGGCTGATGTTTGGAGTGCTGGGGTGATACTATATGTATTACTCAGTGGGGTCCCACCATTTTGGGGAGAAAATGAGCAAGGCATCTTTGATGCTATTCTGCGGGGACATCTAGATTTCTCATCTGATCCTTGGCCGTCTATATCAAGCAGCGCTAAAGATCTTGTTAAGAAGATGCTCTGTTTTGATCCTAAAGAAAGACTTTCTGCCGTTGATGTCCTAAATCATCCATGGATGAGAGAAGATGGTGATGCATCTGATAAGCCCATTGATATTGCTGTCTTAACTAGAATGAAGCAGTTCCGTGCAATGAACAAGCTGAAAAAAGTAGCTCTAAAGGTAATTGCGGAAAATCTTTCCGAAGAAGAAATCATTGGCTTGAAGGAAATGTTCAAGTCAATGGACACTGATAACAGTGGAACAATTACTTTTGAAGAGTTGAAAGCTGGTCTTCCGAAACTGGGCACCAAGCTTTCTGAGTCAGAAGTGAGGCAGTTGATGGAAGCGGCCGATGTGGATGGAAATGGCACAATTGATTACATTGAGTTTATAACAGCTACAATGCACTTGAATCGAATGGAAAGGGAAGATCACTTGTACAAAGCCTTTGAATATTTTGACAAGGATAAGAGTGGGTCCATCACGATGGAAGAGTTGGAGCATGCCCTGAAGGAGTATAATATGGGTGACGAAAAAACAATAAAGGAGATTATTGCAGAAGTTGACACAGACCGTGTATGGTTTCTCTCTCTCTCTCTCTCTCTCATTTTGTTAACTTATGGCTTAAATTCTGAACACCAGTAG

Network for GWHGAAZE005995

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	10	266	8.70E-74
PF13499.7	EF-hand_7	314	374	5.40E-11
PF13405.7	EF-hand_6	386	412	6.10E-07

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005509	molecular_function	calcium ion binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	49.388
	SRR3591706	second leaf	28.866
	SRR3591707	mature leaf	23.353
	SRR3591708	Shoot apex	37.925
	SRR3591709	Stem	44.005
	SRR3591710	White floral bud	33.802
	SRR3591711	White flower	45.707
	SRR3591712	Green floral bud	32.055
	SRR3591713	Yellow flower	43.133
SRP173429	SRR8316895	Juvenile bud stage	20.662
	SRR8316896	Juvenile bud stage	22.487
	SRR8316897	Juvenile bud stage	11.901
	SRR8316894	Third green stage	9.948
	SRR8316900	Third green stage	35.258
	SRR8316901	Third green stage	30.812
	SRR8316898	Complete white stage	20.132
	SRR8316899	Complete white stage	47.813
	SRR8316903	Complete white stage	30.266
	SRR8316902	Silver flowering stage	27.176
	SRR8316904	Silver flowering stage	33.696
	SRR8316905	Silver flowering stage	17.561
	SRR8316906	Gold flowering stage	54.150
	SRR8316907	Gold flowering stage	55.051
	SRR8316908	Gold flowering stage	56.482
SRP132670	SRR6706286	Control	34.103
	SRR6706287	Light intensity 50%	35.963
	SRR6706288	Light intensity 20%	40.528
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.164
	CNS0095593	Slightly white alabastrum(diploid) 2	21.295
	CNS0095594	Slightly white alabastrum(diploid) 3	18.203
	CNS0095595	Whole white alabastrum(diploid) 2	20.395
	CNS0095596	Whole white alabastrum(diploid) 3	18.936
	CNS0095597	Whole white alabastrum(diploid) 4	18.198
	CNS0095598	Silvery flower (diploied) 1	27.428
	CNS0095599	Silvery flower (diploied) 2	25.306
	CNS0095600	Silvery flower (diploied) 3	57.655
	CNS0095601	Golden flower (diploid) 1	28.191
	CNS0095602	Golden flower (diploid) 2	46.382
	CNS0095603	Golden flower (diploid) 3	48.263
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.966
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.140
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.983
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.831
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.487
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.386
	CNS0095610	Silvery flower (tetraploid) 1	55.712
	CNS0095611	Silvery flower (tetraploid) 2	50.017
	CNS0095612	Silvery flower (tetraploid) 3	46.812
	CNS0095613	Golden flower (tetraploid) 1	33.090
	CNS0095614	Golden flower (tetraploid) 2	45.647
	CNS0095615	Golden flower (tetraploid) 3	59.630
CRA001975	CRR073297	Stem 1	32.798
	CRR073298	Stem 2	34.887
	CRR073299	Stem 3	40.357
	CRR073300	Leaf 1	36.817
	CRR073301	Leaf 2	40.044
	CRR073302	Leaf 3	41.838
	CRR073303	Juvenile bud 1	45.170
	CRR073304	Juvenile bud 2	37.610
	CRR073305	Juvenile bud 3	47.131
	CRR073306	Third green 1	37.084
	CRR073307	Third green 2	30.080
	CRR073308	Third green 3	32.022
	CRR073309	Second white 1	47.583
	CRR073310	Second white 2	35.973
	CRR073311	Second white 3	33.787
	CRR073312	Silver flowering 1	48.163
	CRR073313	Silver flowering 2	53.803
	CRR073314	Silver flowering 3	50.700
	CRR073315	Gold flowering 1	29.558
	CRR073316	Gold flowering 2	40.983
	CRR073317	Gold flowering 3	39.573
	CRR073318	Tawny withering 1	43.229
	CRR073319	Tawny withering 2	30.732
	CRR073320	Tawny withering 3	47.925