Gene detail

Detail information of GWHGAAZE005998

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011080895.1	0	PREDICTED: uncharacterized protein LOC105164045 [Sesamum indicum]
trEMBL	tr\|A0A022Q608\|A0A022Q608_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU23411.1}
TAIR10	AT3G26140.1	3E-114	Cellulase (glycosyl hydrolase family 5) protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	17568719	17571458	+
GWHAAZE00000002	mRNA	17568719	17571458	+
GWHAAZE00000002	exon	17568719	17569324	+
GWHAAZE00000002	exon	17569742	17570339	+
GWHAAZE00000002	exon	17571022	17571458	+
GWHAAZE00000002	CDS	17568719	17569324	+
GWHAAZE00000002	CDS	17569742	17570339	+
GWHAAZE00000002	CDS	17571022	17571458	+

Transcript Sequence
>GWHTAAZE006006 TTAATATCCGACCCGATCCTCAAAGGCGTGACCGCATCCCTCCTCGCGGCCCTATTCATGCTCCTTCTTGTATACATCGCCACCCTCCCCCACTCCCACAAATTCCTTTCCACCGATTCCCGCTTCATCGTGGATGCCAAGACCGGGCAACGCGTCAAACTCTACTGCGTAAACTGGCCTGCACACATGAACCCCATGATCCCCGAGGGTCTACAAAAAAAATCCATGAAGAACATCACATACACCATCTCGTCATTGGGTTTTAATTGCGTTAGGCTGACATACGCCACGTACATGTACACTAGGCATTGGGAGATGACGGTTGAGGAGAGTTTGGATGAGTTGGGATTGGAGGGGGCGAAGGAAGGGGTGAGGATGAATAATCCTTGGGTGTTGAATATGACGGTGGTGGAAGTGCAGAAGAGGGTAGTGGAGGAGCTTGGGGCGGAGGGTGTCATGGTGGTGCTTGATAATCACGTCAGTTTTCCGATGTGGTGCTGTGGGTATGCAGATGGAAATGGGTTTTTTGGGGATAGGTATTTTGATCCCAAAGAATGGTTGAAGGGTTTGTCTATTGCTGCCAAGCTCTATAAAGGCAATCCTACGGTAGTAGCCATGAGCATAAGAAATGAACTTCGTGGTCCACGCCAAAACGAGGACGTATGGTACTTATACGTCCAAGATGGTGCATCTGCAATTCGAAGAGAAAACCCGGACGTGCTAGTGATAATTGCGGGCTTGACATTCGAAACCAATCTAAGTTTTTTAAAGAAAAGGCCATTAAGAGTGACATTATCAATGAGCAAGAAAATGGTATACGAGGCACACTGGTATGCGTTTGGGGACCCACCGGAGAGATGGATATTTGAAACAAACGGGTTTTGTGCAGCCATAACGGATTGGTTTATGAGTCAATCGGGTTTCGTATTGAGCGGAGACTATCAGGTTCCTCTGTTTTTGAGCGAATTCGGGAAGGATTTGAGCGGATTGAATGAGGCTGAGAATCGGTATTTTAGTTGTATGATGGCTTTAGTGGCGGAGAAGGATATTGATTGGGCATTTTGGGGTTTGCAGGGGAGTTATATGCTTAGAGAAGGGCAGGTTGAGATGGAGGAGGTCTATGGTCTCTATGATTATACTTGGCAGGGTATGAGGAACAATACTATGCCAGATAGGTTGAATCTCATTCTCCAGATGTTACACGATCCGAATTTGAAAGACAAAACATACAACATTATGTACCACCTACAAACAGGGCGGTGCCTACACGTGAAGAAGCAGAATGTAACGGCAGGGGAGTGCCAGAGGTGGAGCAAGTGGAGCCACGAGGGAGATGAGAGTCCAATATTTCTGAGGGGAGGGGCTGGTTGCTTAACAGTAGTCGGGGAGGGGCTACCGCCTGTTATATCTGACGAATGCAATTCCCCAAGGAGCGTGTGGAGATATGTGTCGAGTTCGAAGCTTCACTTGGCGGCTAAGGACAACAAGGGGATGGATCTGTGTTTGGATTGGAACTCAACCACCGCCAGCTTAGTAACAAACAAGTGCCTTTGTGTAGGAGAGGATCTGGTCGATATTCCTTGGTGTTATGACGACCCTACTAGACAGTGGTTTAAACTTATTCCTTCAAATAAAAGATAA

Network for GWHGAAZE005998

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00150.19	Cellulase	74	357	2.40E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01179	E3.2.1.4	Metabolic pathways	map01100
		Starch and sucrose metabolism	map00500
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.210
	SRR3591706	second leaf	1.703
	SRR3591707	mature leaf	0.178
	SRR3591708	Shoot apex	0.663
	SRR3591709	Stem	5.545
	SRR3591710	White floral bud	44.292
	SRR3591711	White flower	4.352
	SRR3591712	Green floral bud	1.742
	SRR3591713	Yellow flower	1.878
SRP173429	SRR8316895	Juvenile bud stage	0.625
	SRR8316896	Juvenile bud stage	0.964
	SRR8316897	Juvenile bud stage	0.320
	SRR8316894	Third green stage	0.309
	SRR8316900	Third green stage	0.842
	SRR8316901	Third green stage	0.815
	SRR8316898	Complete white stage	0.026
	SRR8316899	Complete white stage	0.244
	SRR8316903	Complete white stage	0.144
	SRR8316902	Silver flowering stage	0.452
	SRR8316904	Silver flowering stage	1.259
	SRR8316905	Silver flowering stage	0.470
	SRR8316906	Gold flowering stage	0.327
	SRR8316907	Gold flowering stage	0.405
	SRR8316908	Gold flowering stage	0.152
SRP132670	SRR6706286	Control	0.783
	SRR6706287	Light intensity 50%	2.072
	SRR6706288	Light intensity 20%	0.439
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.125
	CNS0095593	Slightly white alabastrum(diploid) 2	1.078
	CNS0095594	Slightly white alabastrum(diploid) 3	0.697
	CNS0095595	Whole white alabastrum(diploid) 2	0.291
	CNS0095596	Whole white alabastrum(diploid) 3	1.305
	CNS0095597	Whole white alabastrum(diploid) 4	0.682
	CNS0095598	Silvery flower (diploied) 1	3.057
	CNS0095599	Silvery flower (diploied) 2	12.592
	CNS0095600	Silvery flower (diploied) 3	1.750
	CNS0095601	Golden flower (diploid) 1	3.321
	CNS0095602	Golden flower (diploid) 2	2.067
	CNS0095603	Golden flower (diploid) 3	1.719
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.072
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.108
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.201
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.288
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.238
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.330
	CNS0095610	Silvery flower (tetraploid) 1	2.161
	CNS0095611	Silvery flower (tetraploid) 2	4.694
	CNS0095612	Silvery flower (tetraploid) 3	16.115
	CNS0095613	Golden flower (tetraploid) 1	2.408
	CNS0095614	Golden flower (tetraploid) 2	0.834
	CNS0095615	Golden flower (tetraploid) 3	5.303
CRA001975	CRR073297	Stem 1	1.671
	CRR073298	Stem 2	2.025
	CRR073299	Stem 3	1.109
	CRR073300	Leaf 1	0.794
	CRR073301	Leaf 2	1.007
	CRR073302	Leaf 3	0.834
	CRR073303	Juvenile bud 1	2.566
	CRR073304	Juvenile bud 2	8.933
	CRR073305	Juvenile bud 3	2.603
	CRR073306	Third green 1	11.074
	CRR073307	Third green 2	15.569
	CRR073308	Third green 3	13.280
	CRR073309	Second white 1	0.752
	CRR073310	Second white 2	1.834
	CRR073311	Second white 3	2.013
	CRR073312	Silver flowering 1	11.937
	CRR073313	Silver flowering 2	15.425
	CRR073314	Silver flowering 3	7.557
	CRR073315	Gold flowering 1	10.096
	CRR073316	Gold flowering 2	3.182
	CRR073317	Gold flowering 3	5.543
	CRR073318	Tawny withering 1	11.403
	CRR073319	Tawny withering 2	9.287
	CRR073320	Tawny withering 3	12.916