Detail information of GWHGAAZE006002


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006385777.10NADPH oxidase family protein [Populus trichocarpa]
Swissprottr|Q948U0|RBOHA_SOLTU0Respiratory burst oxidase homolog protein A
trEMBLtr|U5GN34|U5GN34_POPTR0NADPH oxidase family protein {ECO:0000313|EMBL:ERP63574.1}
TAIR10AT1G64060.10respiratory burst oxidase protein F

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1767012017681662-
GWHAAZE00000002mRNA1767012017681662-
GWHAAZE00000002exon1768098717681662-
GWHAAZE00000002exon1768072917680888-
GWHAAZE00000002exon1768022317680271-
GWHAAZE00000002exon1767917017679283-
GWHAAZE00000002exon1767727517677697-
GWHAAZE00000002exon1767232917672715-
GWHAAZE00000002exon1767212817672223-
GWHAAZE00000002exon1767181317671928-
GWHAAZE00000002exon1767153017671697-
GWHAAZE00000002exon1767129617671455-
GWHAAZE00000002exon1767100517671202-
GWHAAZE00000002exon1767076417670892-
GWHAAZE00000002exon1767035117670429-
GWHAAZE00000002exon1767012017670229-
GWHAAZE00000002CDS1768098717681662-
GWHAAZE00000002CDS1768072917680888-
GWHAAZE00000002CDS1768022317680271-
GWHAAZE00000002CDS1767917017679283-
GWHAAZE00000002CDS1767727517677697-
GWHAAZE00000002CDS1767232917672715-
GWHAAZE00000002CDS1767212817672223-
GWHAAZE00000002CDS1767181317671928-
GWHAAZE00000002CDS1767153017671697-
GWHAAZE00000002CDS1767129617671455-
GWHAAZE00000002CDS1767100517671202-
GWHAAZE00000002CDS1767076417670892-
GWHAAZE00000002CDS1767035117670429-
GWHAAZE00000002CDS1767012017670229-
Transcript Sequence

Network for GWHGAAZE006002

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08414.11NADPH_Ox1712711.80E-40
PF01794.20Ferric_reduct4315872.40E-19
PF08022.13FAD_binding_86307432.00E-32
PF08030.13NAD_binding_67509362.20E-52
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13447RBOH MAPK signaling pathway - plant map04016
Plant-pathogen interactionmap04626

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016020cellular_componentmembrane
GO:0016491molecular_functionoxidoreductase activity
GO:0005509molecular_functioncalcium ion binding
GO:0004601molecular_functionperoxidase activity
GO:0050664molecular_functionoxidoreductase activity, acting on NAD(P)H, oxygen as acceptor

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.159
SRR3591706second leaf7.623
SRR3591707mature leaf5.062
SRR3591708Shoot apex3.640
SRR3591709Stem7.000
SRR3591710White floral bud6.849
SRR3591711White flower10.922
SRR3591712Green floral bud5.751
SRR3591713Yellow flower4.526
SRP173429 SRR8316895Juvenile bud stage 3.853
SRR8316896Juvenile bud stage 7.108
SRR8316897Juvenile bud stage 3.863
SRR8316894Third green stage 1.227
SRR8316900Third green stage 1.825
SRR8316901Third green stage 2.549
SRR8316898Complete white stage 2.838
SRR8316899Complete white stage 5.895
SRR8316903Complete white stage 4.636
SRR8316902Silver flowering stage5.689
SRR8316904Silver flowering stage4.021
SRR8316905Silver flowering stage0.697
SRR8316906Gold flowering stage 3.661
SRR8316907Gold flowering stage 4.963
SRR8316908Gold flowering stage 5.243
SRP132670SRR6706286Control3.172
SRR6706287Light intensity 50%3.075
SRR6706288Light intensity 20%2.697
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.353
CNS0095593Slightly white alabastrum(diploid) 22.990
CNS0095594Slightly white alabastrum(diploid) 32.575
CNS0095595Whole white alabastrum(diploid) 22.139
CNS0095596Whole white alabastrum(diploid) 30.545
CNS0095597Whole white alabastrum(diploid) 41.180
CNS0095598Silvery flower (diploied) 12.006
CNS0095599Silvery flower (diploied) 23.225
CNS0095600Silvery flower (diploied) 34.330
CNS0095601Golden flower (diploid) 13.721
CNS0095602Golden flower (diploid) 24.012
CNS0095603Golden flower (diploid) 34.856
CNS0095604Slightly white alabastrum(tetraploid) 10.783
CNS0095605Slightly white alabastrum(tetraploid) 20.513
CNS0095606Slightly white alabastrum(tetraploid) 33.837
CNS0095607Whole white alabastrum(tetraploid) 10.219
CNS0095608Whole white alabastrum(tetraploid) 20.075
CNS0095609Whole white alabastrum(tetraploid) 32.302
CNS0095610Silvery flower (tetraploid) 13.553
CNS0095611Silvery flower (tetraploid) 22.141
CNS0095612Silvery flower (tetraploid) 31.114
CNS0095613Golden flower (tetraploid) 10.749
CNS0095614Golden flower (tetraploid) 21.534
CNS0095615Golden flower (tetraploid) 30.799
CRA001975CRR073297Stem 17.509
CRR073298Stem 24.189
CRR073299Stem 38.459
CRR073300Leaf 14.111
CRR073301Leaf 24.756
CRR073302Leaf 33.829
CRR073303Juvenile bud 14.276
CRR073304Juvenile bud 23.280
CRR073305Juvenile bud 37.357
CRR073306Third green 11.873
CRR073307Third green 22.383
CRR073308Third green 32.404
CRR073309Second white 11.116
CRR073310Second white 21.139
CRR073311Second white 30.822
CRR073312Silver flowering 11.644
CRR073313Silver flowering 21.700
CRR073314Silver flowering 31.546
CRR073315Gold flowering 16.968
CRR073316Gold flowering 211.953
CRR073317Gold flowering 34.280
CRR073318Tawny withering 123.612
CRR073319Tawny withering 223.685
CRR073320Tawny withering 38.600