Gene detail

Detail information of GWHGAAZE006009

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP25376.1	4.1582E-179	hypothetical protein JCGZ_20532 [Jatropha curcas]
Swissprot	tr\|Q0JL44\|SGT1_ORYSJ	4E-154	Protein SGT1 homolog
trEMBL	tr\|A0A067JN12\|A0A067JN12_JATCU	2E-179	Uncharacterized protein {ECO:0000313\|EMBL:KDP25376.1}
TAIR10	AT4G11260.1	2E-110	phosphatase-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	17788597	17793502	-
GWHAAZE00000002	mRNA	17788597	17793502	-
GWHAAZE00000002	exon	17788597	17788704	-
GWHAAZE00000002	exon	17789175	17789279	-
GWHAAZE00000002	exon	17789601	17789683	-
GWHAAZE00000002	exon	17789873	17790011	-
GWHAAZE00000002	exon	17790098	17790163	-
GWHAAZE00000002	exon	17790293	17790389	-
GWHAAZE00000002	exon	17791730	17791904	-
GWHAAZE00000002	exon	17792233	17792357	-
GWHAAZE00000002	exon	17792764	17792833	-
GWHAAZE00000002	exon	17793343	17793502	-
GWHAAZE00000002	CDS	17793343	17793502	-
GWHAAZE00000002	CDS	17792764	17792833	-
GWHAAZE00000002	CDS	17792233	17792357	-
GWHAAZE00000002	CDS	17791730	17791904	-
GWHAAZE00000002	CDS	17790293	17790389	-
GWHAAZE00000002	CDS	17790098	17790163	-
GWHAAZE00000002	CDS	17789873	17790011	-
GWHAAZE00000002	CDS	17789601	17789683	-
GWHAAZE00000002	CDS	17789175	17789279	-
GWHAAZE00000002	CDS	17788597	17788704	-

Transcript Sequence
>GWHTAAZE006017 ATGGCGACTGATCTTGCCGAGAAAGCCAAAGAAGCATTCGTTGACGACGACTTTCAACTCTCCTTCCATCTTTACACTCAAGCAATCCATCTTAGCCCTAAAAACGCCCATCTTTACGCCGACCGAGCTCAGGCCAATATCAAGCTCAACAATTTCACCGATGCTGTTGCGGATGCAAGCAAAGCCATTGAATTGGATCCTTTGATAGCAAAGGCGTACCTTCGTAAAGGCACTGCCTGCTTTAAGCTCAAAGAGTATCATACTGCCAAGGCTGCACTTGTTACTGGCACTTCTTTACTGCAAAATGATTCAAGATTCACCAAGTTGCTTAAAGAATGTGAGGATCGTATTGCAGAGGAAGCTGGAGGTCCAAATGAGTCTGAAAAGCCGCACAAGACAACAGATTCTACCCTTGCACCTGTTGGGTCTGAAACATCGGATATTTCAGTTGGATGTAAGCTACAAACTCTGCAAGGAGACAATGAATCAAACCAGATGAAGGAGATGGCACAAGTCAAACCAAAATATAGGCATTCATTCTATCAGAAACCAGAAGAAGTCGTTGTGACAGTATTTGCTAAGGGTGTACCCGCAAAAAATGTGGCTATCGATTTTGGTGAACAAATTCTAAGTGTTACCATCGATCTGCCTGGTGAAGACGTGTACTGCTTTCAGCCAAGATTGTTTGGAAAGATAGTACCTGAAAAGTGCAAATATGAAGTGCTGACAACAAAAATAGAAATACGTCTTGTAAAGTCCGAGGCCATTAATTGGACATCTCTAGAGTACAGCAAGGAAGCTACAGTTCGACAAAATGTAATTGTACCATCTGTTGTTGCCCAGAGGCCTTCATACCCATCTTCGAAACCAAGAGGGACAAATTGGGACAAGTTAGAGGCCGAAGTGAAGAAGGAGGAAAAAGATGAGAAACTGGACGGTGATGCCGCATTGAACAAGATGTTTGGGGACATCTACAAAAATGCAGACGAGGACATGAGGAGAGCCATGAACAAATCTTTTGTGGAGTCGAATGGAACCGTATTATCAACAAATTGGAAAGATGTAGGAGCAAAGAAGGTGGAGGGGAGCGCCCCTGATGGAATGGAGTTGAAGAAGTGGGAGTATTAG

Network for GWHGAAZE006009

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13181.7	TPR_8	36	67	0.021
PF13181.7	TPR_8	70	93	0.15
PF04969.17	CS	177	252	4.80E-14
PF05002.16	SGS	294	373	7.10E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12795	SUGT1, SGT1	NOD-like receptor signaling pathway	map04621
K12795	SUGT1, SGT1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	42.000
	SRR3591706	second leaf	6.732
	SRR3591707	mature leaf	18.190
	SRR3591708	Shoot apex	23.732
	SRR3591709	Stem	30.920
	SRR3591710	White floral bud	8.963
	SRR3591711	White flower	19.527
	SRR3591712	Green floral bud	11.382
	SRR3591713	Yellow flower	20.037
SRP173429	SRR8316895	Juvenile bud stage	106.860
	SRR8316896	Juvenile bud stage	135.380
	SRR8316897	Juvenile bud stage	140.752
	SRR8316894	Third green stage	11.759
	SRR8316900	Third green stage	40.635
	SRR8316901	Third green stage	58.210
	SRR8316898	Complete white stage	6.317
	SRR8316899	Complete white stage	58.538
	SRR8316903	Complete white stage	8.387
	SRR8316902	Silver flowering stage	24.691
	SRR8316904	Silver flowering stage	27.620
	SRR8316905	Silver flowering stage	19.917
	SRR8316906	Gold flowering stage	55.837
	SRR8316907	Gold flowering stage	46.755
	SRR8316908	Gold flowering stage	47.352
SRP132670	SRR6706286	Control	22.334
	SRR6706287	Light intensity 50%	29.281
	SRR6706288	Light intensity 20%	25.337
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.412
	CNS0095593	Slightly white alabastrum(diploid) 2	25.293
	CNS0095594	Slightly white alabastrum(diploid) 3	21.265
	CNS0095595	Whole white alabastrum(diploid) 2	20.521
	CNS0095596	Whole white alabastrum(diploid) 3	8.561
	CNS0095597	Whole white alabastrum(diploid) 4	13.081
	CNS0095598	Silvery flower (diploied) 1	18.834
	CNS0095599	Silvery flower (diploied) 2	159.847
	CNS0095600	Silvery flower (diploied) 3	77.217
	CNS0095601	Golden flower (diploid) 1	250.411
	CNS0095602	Golden flower (diploid) 2	90.790
	CNS0095603	Golden flower (diploid) 3	84.493
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.077
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.394
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.342
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.607
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.221
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.132
	CNS0095610	Silvery flower (tetraploid) 1	29.223
	CNS0095611	Silvery flower (tetraploid) 2	34.267
	CNS0095612	Silvery flower (tetraploid) 3	27.010
	CNS0095613	Golden flower (tetraploid) 1	26.208
	CNS0095614	Golden flower (tetraploid) 2	22.830
	CNS0095615	Golden flower (tetraploid) 3	11.373
CRA001975	CRR073297	Stem 1	10.322
	CRR073298	Stem 2	7.285
	CRR073299	Stem 3	7.652
	CRR073300	Leaf 1	15.882
	CRR073301	Leaf 2	13.982
	CRR073302	Leaf 3	13.656
	CRR073303	Juvenile bud 1	15.330
	CRR073304	Juvenile bud 2	9.813
	CRR073305	Juvenile bud 3	8.749
	CRR073306	Third green 1	8.184
	CRR073307	Third green 2	5.382
	CRR073308	Third green 3	10.468
	CRR073309	Second white 1	5.230
	CRR073310	Second white 2	8.533
	CRR073311	Second white 3	7.708
	CRR073312	Silver flowering 1	6.126
	CRR073313	Silver flowering 2	2.998
	CRR073314	Silver flowering 3	5.956
	CRR073315	Gold flowering 1	6.091
	CRR073316	Gold flowering 2	6.250
	CRR073317	Gold flowering 3	2.842
	CRR073318	Tawny withering 1	19.007
	CRR073319	Tawny withering 2	36.374
	CRR073320	Tawny withering 3	18.164