Gene detail

Detail information of GWHGAAZE006010

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI34395.3	unnamed protein product [Vitis vinifera]
trEMBL	tr\|F6HUN5\|F6HUN5_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58201.1}
TAIR10	AT4G11270.1	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	17811330	17822081	+
GWHAAZE00000002	mRNA	17811330	17822081	+
GWHAAZE00000002	exon	17811330	17811482	+
GWHAAZE00000002	exon	17812971	17813562	+
GWHAAZE00000002	exon	17813933	17815662	+
GWHAAZE00000002	exon	17815749	17815852	+
GWHAAZE00000002	exon	17816190	17816259	+
GWHAAZE00000002	exon	17816936	17817721	+
GWHAAZE00000002	exon	17818693	17818907	+
GWHAAZE00000002	exon	17819811	17819934	+
GWHAAZE00000002	exon	17820386	17820435	+
GWHAAZE00000002	exon	17821065	17821302	+
GWHAAZE00000002	exon	17821938	17822081	+
GWHAAZE00000002	CDS	17811330	17811482	+
GWHAAZE00000002	CDS	17812971	17813562	+
GWHAAZE00000002	CDS	17813933	17815662	+
GWHAAZE00000002	CDS	17815749	17815852	+
GWHAAZE00000002	CDS	17816190	17816259	+
GWHAAZE00000002	CDS	17816936	17817721	+
GWHAAZE00000002	CDS	17818693	17818907	+
GWHAAZE00000002	CDS	17819811	17819934	+
GWHAAZE00000002	CDS	17820386	17820435	+
GWHAAZE00000002	CDS	17821065	17821302	+
GWHAAZE00000002	CDS	17821938	17822081	+

Transcript Sequence
>GWHTAAZE006018 ATGAAGTGTCGATCCATCGCCTGTATATGGTCAGACTCTCCACCTCTTCACAGAGTCACCGCCACCGCCGTACTTAATCAACCACCCACTCTCTACACCGGCGGATCCGATGGCACCATCGTCTGGTGGAATCTCTCCACCAATTTCCAACATGACATAAAATCAATTGCTATGTTATGTGGTCATGCTGCACCCATTGCCGATCTTGGAATCTGTTTCCCTGCAGCAGTTCCAGGAAATGAAATTATAGGTGATCTACCAAGTAATGTGGTGCCTAACTCTAACTCAGTTAACTATGGTGCGCTTATAAGTGCGTGTACTGATGGTGTATTATGCATCTGGAGCAGAGGCAGTGGGCATTGCAGGCGCAGGAGGAGACTGCCTCCTTGGGCCGGGAGTCCATCCATGGTGCGTACATTGCCCGACAATCGCAGATATGTATGCGTTGCCTGTGATTCTGTTCACTCATCCGACCATCAGTCACTTGATGCCACTGAAAAGGGCGAAGCTTCAATGAACAGAGAAGTACAGTACAAAAAACCTTCAAAGTGCACGGTGGTAATTGTTGATTCATATACACTTGCCATTGTCCAGACGGTTTTTCATGGTAATTTATCCATTGGGCCTCTGAAGTTCATGTCTGTGATTTTGCCTGTTGGGGATATGGAGAAGCAGTCTGTGCTGATGGCTGATTCGTTTGGCATGGTACAATGTGTTCCTATTATAAATGACAATGATCCAAAGGGCAACATATTCAAGTTTGAGCCTCTATGTGTGTTCCCTGCTGTTTCTCATCTTCCTGCTATGAGATTGTCTATTTGTTTCATTCAATTGAATAGTTATCTTCTACGTATTGAATCAACTTGCTTTCACAATGAAGAACCTTTGCCGTGGAAACCACATGTCACTATCTGGTTATTGCCTCAGCTACATGGTAATAATGGGAAGTTTATTCAAGAATGCAAAATGCTTGGCAAAAGCAGTTTTTCTGACCACTGGAGTATCCACTCTACTTTCTGTAACAAAATAGAGGATAGTGAATTAAATTTGCCGCAAAGTAGTGTAAATGTTATACCTGCAAATGATGAAATATATGGCCATTACCAGAACAAACCGCTTGTATCTTCCTCAATGGTTATTTGTGAAAATTATTACACACCTTACGCCATTGTTTATGGCTTCTACAGTGGTGAAATAGAAGTTGTGCATTTTCATATGTTTTTTGAGGGACTGAATGCTCATGGTGAAGCAGATTCACATACATCTAAGCGACATCTTTCTGGGCACACAGGTGCTGTACTATGTTTGGCTGCTCATCGGATGGTGAGTGCCTCCAACAGACGGGGTTTCAATCGTGTTTTAGTGTCTGGAAGCAATGACTGCACAATTCGTATATGGGACCTTGACTCGAGTAATCTCATTTCAGTGATGCACCAACATGTAGCTCCAGTACGCCAAATAGTTCTACCTCCACCCCAAACTGACAGGCCATGGAGTGATTGTTTTCTTTCTGTAGGAGAGGATTTTTGTGTTGCGGTTACTTCTCTCGAGACTATGCGGGTGGAGAGAATGTTTCCCGGGCACCCATACTATCCTGCAAAAGTTGTATGGGACAGTACAAGAGGATATGTAGGATGTCTATGCCTGAACGATTCTGCAACATCTGATTTATTTGATGTTCTTTACATTTGGGATATGAAGACAGGTGCTCGTGAGCGAGTGCTTCGGGGGACCACTGCTCATTCAATGTTTGATCATTTTTATACAGGCATAAATGCAAATACCCTTTCTGGCAGTGTGGCGAATGGAAATACTTCAGCTTCATCATTTCTTTTTCCCATAATTGAAGATACAAGCTTTTCACAATCTCATTTAAAAAATCCAGGAAAGGGGTTTACTTCGACTGAGCCCAATACTTTGCAAGCACATGCTGGCAAAGGTGGAGCTACAAAACTGTATCCTTCTACATCGTCCATCTTTCAAAGTAACAACCATCCAATTAAATGCTCTTGCCCTTTTCCTGGAATTGCAACTCTTAGTTTCGACCTTGCTTCATTGATATCTCTCTGTAAAAATCCCGAGTTTTCCAAAGAAAGTACTCAAGATAAAGCCCATGTAGAGAAACTGGAAGCTGAGACAACCAAACATGGTTATAGGAGAGTGAATAGCCCTTCAAAAGGACGGGAGGTTGAGATGCCAAGCCCCCGCCAGATGACTATAAACAACGGTTCTGGTTTACAAGGTATCTCCACTGATACTTTAGAAAATGATGACTGGATTCGATCGCTTGAAGGATGTTTAATTCAATTTACCTTGTCCATTTTACACCTGTGGAATGTGGATTCTGAGCTCGATAAGCTGCTAGTTACGGACATGAAGCTAAAGAGACCAGATAATTTTATGGTAGCCTCTGGTTTGCTTGGAGATAGAGGATCTCTCACATTGGCATTTCCTGGTTCTAGCAATAAACTTGAGCTTTGGAAATGGTCATCAGAGTTCTGTGCGATAAGATCATTAGCTATGGTGTCCCTTGCGCAGCACATGGTTAGCTTGTCTCACTCCTGCTCTGCCGCCAGCAGTGCTCTAGCAGCCTTTTATACACGGAACTTTGCAGAGAAAATTCCGGATATAAAACCACCTTTACTCCAGCTGTTAGTAAGCTTTTGGCAAGATGAAAGTGAACATGTAAGGATGGCCGCACGCTCTTTGTTCCACTGTGCCGCATCACGGGCTATTCCATTTCCCTTGTGTTGTGAAAAAGCAAATGATCATTCAAAACTTTTAGGCTCTTCAAATGAAACAGTAGAAAGCGGACATGGATATCCAAGAATAAAGGAAACATCCCAGAACAGTCTGAAATCTGAAATTTCTCAGGCTGATGAATCTGAAATAGTAGCATGGCTAGAATCATTTGAAGAGCAAGACTGGATTTCTTGTGTTGGGGGTACAAGTCAAGATGCAATGACGTCTCATATCATTGTTGCTGCTGCATTGGCTGTGTGGTACCCAAGCCTTGTGAAACCAAGTCTTGCGGTCCTGGCCGTTCATCCACTAATGAAATTGGTAATGGCCATGAACGAAAAATATAGTTCCACCGCTGCAGAAATTCTGGCAGAAGGCATGGAGAGTACATGGAAGGCATGCATTCTTTCTGAAATCCCTCGGCTTCTTGGTGATATATTCTTCCAAATAGAGTGTGTTAGTGGAGCATCACCTGCCAGCTCATCTGCTAAAAATCCGGTTGACATTCGGGAGACTTTGATTGGGGTACTTCTCCCTAGTTTAGCAATGGCTGATATATTAGTGTTTCTGAATGTAATCGAAAGTCAAATTTGGTCAACTGCATCTGATTCGCCTGTTCATGTAGTATCCCTCATGACTCTCATCAGGGTTTTGCGTGGTTCTCCGAGAAACTTAGCACAATACCTTGACAAGACAGGTTTGCAGGTGGTCAATTTCATTTTACAAACAATGGACCCTGGCAACTCGGTCATGCGCAAAAGTTGCCTTAGTAGTTCAATGGTTGCATTGAAGGAAGTTGTACGGGTATACCCTATGGTAGCCCTGAATGACACATCAACCCGGTTGGCTGTTGGGGATGCATTTGGAGAGATCGGTAATGCTAGCATTCGGGTATATGAGATGCTAAGCATGACGAAGATAAAGGTGTTGGACGCAAGTGGACCGCCTGGGCTCCCACATTTGCTCGGTGGAGCTTCAGAAGTGGGAGTAACTACAGCAATATCAGCTTTAAGCTTTGCACCAGATGGAGAGATTATCTTACACCATATGTTTGCTACGGTGATCCCTGTTCACCTGCTGCTAGTTCTTAGAAAATGCTCTCTCAAATTGCAGGGCCTAGTTGCTTTTTCTGAGCATGGGTTGATGATCAGATGGTGGTCATTGGAATCCGTATGGTGGGAAAAAATCAGCCGGAACCTCGTTCCTGTACAGTGCACTAAACTGATTTTTGTTCCCCCCTGGGAGGGTTTCTCACCTAATTCTTCTAGGTCGAGCATAATGGCGAGTGTAATGAGTAATGAGAGACAGACCAACCTACAGGAAAGTACAAGGAGTTTGAACGAAGTGGAGAGAATCAAACTCTTGATTCATAACCTTGATTTGTCTTATAGACTAGAATGGGTGGGCCAAAGAAAAGTGCAACTAAAGCAGCATGGTCAGGAATTGGGCACTTTCCAGTTATAA

Network for GWHGAAZE006010

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	424	467	7.20E-05

Protein Sequence

>GWHPAAZE006014
MKCRSIACIWSDSPPLHRVTATAVLNQPPTLYTGGSDGTIVWWNLSTNFQHDIKSIAMLCGHAAPIADLGICFPAAVPGNEIIGDLPSNVVPNSNSVNYGALISACTDGVLCIWSRGSGHCRRRRRLPPWAGSPSMVRTLPDNRRYVCVACDSVHSSDHQSLDATEKGEASMNREVQYKKPSKCTVVIVDSYTLAIVQTVFHGNLSIGPLKFMSVILPVGDMEKQSVLMADSFGMVQCVPIINDNDPKGNIFKFEPLCVFPAVSHLPAMRLSICFIQLNSYLLRIESTCFHNEEPLPWKPHVTIWLLPQLHGNNGKFIQECKMLGKSSFSDHWSIHSTFCNKIEDSELNLPQSSVNVIPANDEIYGHYQNKPLVSSSMVICENYYTPYAIVYGFYSGEIEVVHFHMFFEGLNAHGEADSHTSKRHLSGHTGAVLCLAAHRMVSASNRRGFNRVLVSGSNDCTIRIWDLDSSNLISVMHQHVAPVRQIVLPPPQTDRPWSDCFLSVGEDFCVAVTSLETMRVERMFPGHPYYPAKVVWDSTRGYVGCLCLNDSATSDLFDVLYIWDMKTGARERVLRGTTAHSMFDHFYTGINANTLSGSVANGNTSASSFLFPIIEDTSFSQSHLKNPGKGFTSTEPNTLQAHAGKGGATKLYPSTSSIFQSNNHPIKCSCPFPGIATLSFDLASLISLCKNPEFSKESTQDKAHVEKLEAETTKHGYRRVNSPSKGREVEMPSPRQMTINNGSGLQGISTDTLENDDWIRSLEGCLIQFTLSILHLWNVDSELDKLLVTDMKLKRPDNFMVASGLLGDRGSLTLAFPGSSNKLELWKWSSEFCAIRSLAMVSLAQHMVSLSHSCSAASSALAAFYTRNFAEKIPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRAIPFPLCCEKANDHSKLLGSSNETVESGHGYPRIKETSQNSLKSEISQADESEIVAWLESFEEQDWISCVGGTSQDAMTSHIIVAAALAVWYPSLVKPSLAVLAVHPLMKLVMAMNEKYSSTAAEILAEGMESTWKACILSEIPRLLGDIFFQIECVSGASPASSSAKNPVDIRETLIGVLLPSLAMADILVFLNVIESQIWSTASDSPVHVVSLMTLIRVLRGSPRNLAQYLDKTGLQVVNFILQTMDPGNSVMRKSCLSSSMVALKEVVRVYPMVALNDTSTRLAVGDAFGEIGNASIRVYEMLSMTKIKVLDASGPPGLPHLLGGASEVGVTTAISALSFAPDGEIILHHMFATVIPVHLLLVLRKCSLKLQGLVAFSEHGLMIRWWSLESVWWEKISRNLVPVQCTKLIFVPPWEGFSPNSSRSSIMASVMSNERQTNLQESTRSLNEVERIKLLIHNLDLSYRLEWVGQRKVQLKQHGQELGTFQL

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.151
	SRR3591706	second leaf	8.304
	SRR3591707	mature leaf	7.306
	SRR3591708	Shoot apex	6.811
	SRR3591709	Stem	11.561
	SRR3591710	White floral bud	15.481
	SRR3591711	White flower	16.819
	SRR3591712	Green floral bud	13.989
	SRR3591713	Yellow flower	12.997
SRP173429	SRR8316895	Juvenile bud stage	6.306
	SRR8316896	Juvenile bud stage	8.590
	SRR8316897	Juvenile bud stage	3.871
	SRR8316894	Third green stage	4.268
	SRR8316900	Third green stage	10.970
	SRR8316901	Third green stage	10.329
	SRR8316898	Complete white stage	4.692
	SRR8316899	Complete white stage	11.719
	SRR8316903	Complete white stage	10.511
	SRR8316902	Silver flowering stage	5.014
	SRR8316904	Silver flowering stage	8.831
	SRR8316905	Silver flowering stage	3.728
	SRR8316906	Gold flowering stage	10.875
	SRR8316907	Gold flowering stage	9.757
	SRR8316908	Gold flowering stage	12.371
SRP132670	SRR6706286	Control	11.262
	SRR6706287	Light intensity 50%	11.752
	SRR6706288	Light intensity 20%	12.798
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.612
	CNS0095593	Slightly white alabastrum(diploid) 2	5.170
	CNS0095594	Slightly white alabastrum(diploid) 3	5.075
	CNS0095595	Whole white alabastrum(diploid) 2	6.359
	CNS0095596	Whole white alabastrum(diploid) 3	5.991
	CNS0095597	Whole white alabastrum(diploid) 4	6.469
	CNS0095598	Silvery flower (diploied) 1	8.246
	CNS0095599	Silvery flower (diploied) 2	5.543
	CNS0095600	Silvery flower (diploied) 3	20.861
	CNS0095601	Golden flower (diploid) 1	6.677
	CNS0095602	Golden flower (diploid) 2	16.777
	CNS0095603	Golden flower (diploid) 3	17.203
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.374
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.534
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.796
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.658
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.490
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.083
	CNS0095610	Silvery flower (tetraploid) 1	13.910
	CNS0095611	Silvery flower (tetraploid) 2	15.974
	CNS0095612	Silvery flower (tetraploid) 3	20.709
	CNS0095613	Golden flower (tetraploid) 1	8.773
	CNS0095614	Golden flower (tetraploid) 2	12.971
	CNS0095615	Golden flower (tetraploid) 3	17.279
CRA001975	CRR073297	Stem 1	9.487
	CRR073298	Stem 2	8.950
	CRR073299	Stem 3	7.425
	CRR073300	Leaf 1	10.972
	CRR073301	Leaf 2	9.326
	CRR073302	Leaf 3	6.256
	CRR073303	Juvenile bud 1	8.211
	CRR073304	Juvenile bud 2	5.653
	CRR073305	Juvenile bud 3	12.614
	CRR073306	Third green 1	7.079
	CRR073307	Third green 2	5.142
	CRR073308	Third green 3	7.143
	CRR073309	Second white 1	7.144
	CRR073310	Second white 2	8.237
	CRR073311	Second white 3	10.275
	CRR073312	Silver flowering 1	8.971
	CRR073313	Silver flowering 2	11.645
	CRR073314	Silver flowering 3	8.374
	CRR073315	Gold flowering 1	4.336
	CRR073316	Gold flowering 2	10.111
	CRR073317	Gold flowering 3	5.356
	CRR073318	Tawny withering 1	8.189
	CRR073319	Tawny withering 2	6.605
	CRR073320	Tawny withering 3	8.301