Detail information of GWHGAAZE006013


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002278325.13.4531E-154PREDICTED: G patch domain-containing protein 4 isoform X2 [Vitis vinifera]
trEMBLtr|D7TV66|D7TV66_VITVI1E-154Putative uncharacterized protein {ECO:0000313|EMBL:CBI34391.3}
TAIR10AT1G63980.22E-79D111/G-patch domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1786359817868610-
GWHAAZE00000002mRNA1786359817868610-
GWHAAZE00000002exon1786359817863651-
GWHAAZE00000002exon1786384217863958-
GWHAAZE00000002exon1786404317864279-
GWHAAZE00000002exon1786473417864915-
GWHAAZE00000002exon1786521017865303-
GWHAAZE00000002exon1786750017867566-
GWHAAZE00000002exon1786766617867777-
GWHAAZE00000002exon1786786217867889-
GWHAAZE00000002exon1786800017868076-
GWHAAZE00000002exon1786832317868397-
GWHAAZE00000002exon1786853217868610-
GWHAAZE00000002CDS1786853217868610-
GWHAAZE00000002CDS1786832317868397-
GWHAAZE00000002CDS1786800017868076-
GWHAAZE00000002CDS1786786217867889-
GWHAAZE00000002CDS1786766617867777-
GWHAAZE00000002CDS1786750017867566-
GWHAAZE00000002CDS1786521017865303-
GWHAAZE00000002CDS1786473417864915-
GWHAAZE00000002CDS1786404317864279-
GWHAAZE00000002CDS1786384217863958-
GWHAAZE00000002CDS1786359817863651-
Transcript Sequence

Network for GWHGAAZE006013

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0240


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01585.24G-patch27552.80E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf46.015
SRR3591706second leaf44.862
SRR3591707mature leaf20.032
SRR3591708Shoot apex65.475
SRR3591709Stem34.444
SRR3591710White floral bud47.966
SRR3591711White flower50.971
SRR3591712Green floral bud50.019
SRR3591713Yellow flower44.605
SRP173429 SRR8316895Juvenile bud stage 34.472
SRR8316896Juvenile bud stage 50.621
SRR8316897Juvenile bud stage 27.278
SRR8316894Third green stage 19.334
SRR8316900Third green stage 50.585
SRR8316901Third green stage 50.886
SRR8316898Complete white stage 15.508
SRR8316899Complete white stage 44.295
SRR8316903Complete white stage 24.256
SRR8316902Silver flowering stage20.300
SRR8316904Silver flowering stage24.046
SRR8316905Silver flowering stage9.565
SRR8316906Gold flowering stage 42.863
SRR8316907Gold flowering stage 37.218
SRR8316908Gold flowering stage 44.146
SRP132670SRR6706286Control43.291
SRR6706287Light intensity 50%43.345
SRR6706288Light intensity 20%43.034
CNP0000432CNS0095592Slightly white alabastrum(diploid) 145.382
CNS0095593Slightly white alabastrum(diploid) 242.026
CNS0095594Slightly white alabastrum(diploid) 347.361
CNS0095595Whole white alabastrum(diploid) 253.726
CNS0095596Whole white alabastrum(diploid) 353.058
CNS0095597Whole white alabastrum(diploid) 451.684
CNS0095598Silvery flower (diploied) 137.524
CNS0095599Silvery flower (diploied) 231.360
CNS0095600Silvery flower (diploied) 326.256
CNS0095601Golden flower (diploid) 125.917
CNS0095602Golden flower (diploid) 229.283
CNS0095603Golden flower (diploid) 329.928
CNS0095604Slightly white alabastrum(tetraploid) 157.461
CNS0095605Slightly white alabastrum(tetraploid) 255.743
CNS0095606Slightly white alabastrum(tetraploid) 354.232
CNS0095607Whole white alabastrum(tetraploid) 147.375
CNS0095608Whole white alabastrum(tetraploid) 248.618
CNS0095609Whole white alabastrum(tetraploid) 351.408
CNS0095610Silvery flower (tetraploid) 129.285
CNS0095611Silvery flower (tetraploid) 224.686
CNS0095612Silvery flower (tetraploid) 330.778
CNS0095613Golden flower (tetraploid) 119.173
CNS0095614Golden flower (tetraploid) 230.120
CNS0095615Golden flower (tetraploid) 320.321
CRA001975CRR073297Stem 136.262
CRR073298Stem 235.589
CRR073299Stem 323.603
CRR073300Leaf 131.050
CRR073301Leaf 228.249
CRR073302Leaf 328.328
CRR073303Juvenile bud 125.756
CRR073304Juvenile bud 217.185
CRR073305Juvenile bud 315.618
CRR073306Third green 113.374
CRR073307Third green 211.833
CRR073308Third green 312.702
CRR073309Second white 19.087
CRR073310Second white 215.384
CRR073311Second white 312.005
CRR073312Silver flowering 116.009
CRR073313Silver flowering 210.164
CRR073314Silver flowering 311.345
CRR073315Gold flowering 115.739
CRR073316Gold flowering 226.758
CRR073317Gold flowering 38.832
CRR073318Tawny withering 122.683
CRR073319Tawny withering 226.943
CRR073320Tawny withering 327.324