Gene detail

Detail information of GWHGAAZE006018

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011029348.1	7.05E-114	PREDICTED: protein ODORANT1-like [Populus euphratica]
Swissprot	tr\|Q8LPH6\|MYB86_ARATH	8E-59	Transcription factor MYB86
trEMBL	tr\|B9GKD6\|B9GKD6_POPTR	5E-114	Uncharacterized protein {ECO:0000313\|EMBL:EEE82819.1}
TAIR10	AT1G63910.1	6E-66	myb domain protein 103

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	17993595	17996454	+
GWHAAZE00000002	mRNA	17993595	17996454	+
GWHAAZE00000002	exon	17993595	17993776	+
GWHAAZE00000002	exon	17993868	17994011	+
GWHAAZE00000002	exon	17995740	17996454	+
GWHAAZE00000002	CDS	17993595	17993776	+
GWHAAZE00000002	CDS	17993868	17994011	+
GWHAAZE00000002	CDS	17995740	17996454	+

Transcript Sequence
>GWHTAAZE006026 ATGGGACATCACTCATGCTGCAACCAACAGAAAGTAAAGAGAGGGCTTTGGTCACCTGAGGAAGATGAGAAGCTCATTAGATACATCACCACTCATGGCTATGGTTGTTGGAGTGAAGTCCCTGAAAAAGCTGGTCTCTCTCTCTCTCTCTCTTTTGTCTCTCATGTGTGCACGAGCACATTTTTTGGTGGTGCAGGGCTACAAAGATGTGGGAAGAGTTGTAGGTTGAGATGGATCAACTACTTGAGACCTGATATTAGAAGAGGAAGGTTTACACCTGAGGAGGAGAAATTGATTATTAGCCTTCATGCTGCTGTAGGCAACAGATGGGCTCACATAGCAAGTCACTTGCCTGGAAGAACAGACAATGAAATAAAGAACTATTGGAACTCGTGGATCAAGAAGAAGATCCGAAAGCCTTCGGCACCACCACCACCACCATCACTACCACCAACTAACACCACAACTACCACTAGTACTGATCACCATTTGCAATTCGGATATGGGGAGACCCGACTTGACTTCTTGAATCCGGATTTGGGAGCGAAGCCCCCACTCCAAGACACAATATTCTCCACCTCTAGCCCATTTTTCATGTTTGACACCACTAACTCATTCCAACCCATAAATATTGACCATAACAACAATATTAATGGAAGACTAGACCTTTTCAATGAGCCCACCAAAGAGCTAAGCAGCATTGACACGTGGCAAATGAACCAACAACAACAACAAGAAGAACGAGTACAATCATTTAACACGAATAACAATCCTCAAACGACGTCGTTTTCGAGTAGCATGGATACGAGTTATTTGGGTCCGTTGATGGACCAGAACATGGCGGAGATGAATTATTTGGGGCCGTTGATGGAGAATGGGGATCAATGGGTCGTCGAAAATCAGTGCCAAAGTTACCTGTTCTGGGACAATGCGGCCGAAGAAGGGCCACTAAGTGGGGAAGAAATGGCGGCGGTGGCGGCTTCTTCATCAAGTATTGTTGGGGATATGATGATTTCTTCTTATCCTAATCCATCTTTTTGA

Network for GWHGAAZE006018

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	82	4.40E-12
PF00249.32	Myb_DNA-binding	88	132	6.60E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.650
	SRR3591706	second leaf	0.651
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.528
	SRR3591709	Stem	58.071
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.241
	SRR8316896	Juvenile bud stage	0.308
	SRR8316897	Juvenile bud stage	0.176
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.056
	SRR8316901	Third green stage	0.187
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.023
	SRR6706287	Light intensity 50%	0.178
	SRR6706288	Light intensity 20%	0.128
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.061
	CNS0095594	Slightly white alabastrum(diploid) 3	0.102
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.050
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.210
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.300
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.124
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.056
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.051
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.737
	CRR073299	Stem 3	0.040
	CRR073300	Leaf 1	0.073
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.139
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.094
	CRR073318	Tawny withering 1	6.000
	CRR073319	Tawny withering 2	3.967
	CRR073320	Tawny withering 3	10.701