Detail information of GWHGAAZE006022


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007040322.10POX family protein isoform 1 [Theobroma cacao]
Swissprottr|Q38897|BEL1_ARATH3E-149Homeobox protein BEL1 homolog
trEMBLtr|A0A061G6K4|A0A061G6K4_THECC0POX family protein isoform 1 {ECO:0000313|EMBL:EOY24827.1}
TAIR10AT5G41410.11E-112POX (plant homeobox) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1808833318092903-
GWHAAZE00000002mRNA1808833318092903-
GWHAAZE00000002exon1808833318088974-
GWHAAZE00000002exon1809036318090423-
GWHAAZE00000002exon1809121518091597-
GWHAAZE00000002exon1809207618092903-
GWHAAZE00000002CDS1809207618092903-
GWHAAZE00000002CDS1809121518091597-
GWHAAZE00000002CDS1809036318090423-
GWHAAZE00000002CDS1808833318088974-
Transcript Sequence

Network for GWHGAAZE006022

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07526.12POX2003265.60E-46
PF05920.12Homeobox_KN3964353.10E-17
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHB-BELL

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0003677molecular_functionDNA binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE006022.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3020406080100120140160Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.286
SRR3591706second leaf39.944
SRR3591707mature leaf150.007
SRR3591708Shoot apex3.819
SRR3591709Stem1.119
SRR3591710White floral bud14.390
SRR3591711White flower9.743
SRR3591712Green floral bud17.302
SRR3591713Yellow flower3.512
SRP173429 SRR8316895Juvenile bud stage 5.304
SRR8316896Juvenile bud stage 4.071
SRR8316897Juvenile bud stage 3.000
SRR8316894Third green stage 3.575
SRR8316900Third green stage 12.710
SRR8316901Third green stage 8.449
SRR8316898Complete white stage 1.995
SRR8316899Complete white stage 13.694
SRR8316903Complete white stage 4.347
SRR8316902Silver flowering stage1.133
SRR8316904Silver flowering stage1.345
SRR8316905Silver flowering stage0.618
SRR8316906Gold flowering stage 2.624
SRR8316907Gold flowering stage 1.866
SRR8316908Gold flowering stage 2.538
SRP132670SRR6706286Control22.081
SRR6706287Light intensity 50%21.428
SRR6706288Light intensity 20%21.825
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.754
CNS0095593Slightly white alabastrum(diploid) 24.084
CNS0095594Slightly white alabastrum(diploid) 34.750
CNS0095595Whole white alabastrum(diploid) 25.055
CNS0095596Whole white alabastrum(diploid) 32.364
CNS0095597Whole white alabastrum(diploid) 46.207
CNS0095598Silvery flower (diploied) 116.761
CNS0095599Silvery flower (diploied) 29.612
CNS0095600Silvery flower (diploied) 36.848
CNS0095601Golden flower (diploid) 116.840
CNS0095602Golden flower (diploid) 211.472
CNS0095603Golden flower (diploid) 39.159
CNS0095604Slightly white alabastrum(tetraploid) 15.584
CNS0095605Slightly white alabastrum(tetraploid) 24.750
CNS0095606Slightly white alabastrum(tetraploid) 38.506
CNS0095607Whole white alabastrum(tetraploid) 17.462
CNS0095608Whole white alabastrum(tetraploid) 22.442
CNS0095609Whole white alabastrum(tetraploid) 316.911
CNS0095610Silvery flower (tetraploid) 10.922
CNS0095611Silvery flower (tetraploid) 24.343
CNS0095612Silvery flower (tetraploid) 31.153
CNS0095613Golden flower (tetraploid) 10.777
CNS0095614Golden flower (tetraploid) 20.705
CNS0095615Golden flower (tetraploid) 30.564
CRA001975CRR073297Stem 13.797
CRR073298Stem 25.685
CRR073299Stem 34.157
CRR073300Leaf 15.254
CRR073301Leaf 24.877
CRR073302Leaf 34.932
CRR073303Juvenile bud 14.358
CRR073304Juvenile bud 23.678
CRR073305Juvenile bud 34.802
CRR073306Third green 12.583
CRR073307Third green 22.783
CRR073308Third green 33.494
CRR073309Second white 10.527
CRR073310Second white 21.505
CRR073311Second white 30.877
CRR073312Silver flowering 10.610
CRR073313Silver flowering 21.605
CRR073314Silver flowering 31.056
CRR073315Gold flowering 186.272
CRR073316Gold flowering 2108.632
CRR073317Gold flowering 385.971
CRR073318Tawny withering 15.143
CRR073319Tawny withering 27.065
CRR073320Tawny withering 32.057