Detail information of GWHGAAZE006026


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273444.10PREDICTED: DNA repair helicase XPB1 [Vitis vinifera]
Swissprottr|Q38861|XPB1_ARATH0DNA repair helicase XPB1
trEMBLtr|F6HUL9|F6HUL9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB58185.1}
TAIR10AT5G41370.10homolog of xeroderma pigmentosum complementation group B 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1818335918194731-
GWHAAZE00000002mRNA1818335918194731-
GWHAAZE00000002exon1819472218194731-
GWHAAZE00000002exon1819455218194595-
GWHAAZE00000002exon1819438218194457-
GWHAAZE00000002exon1819412318194291-
GWHAAZE00000002exon1819365418193831-
GWHAAZE00000002exon1819346318193519-
GWHAAZE00000002exon1819299318193136-
GWHAAZE00000002exon1819264618192726-
GWHAAZE00000002exon1819213818192225-
GWHAAZE00000002exon1819062218190959-
GWHAAZE00000002exon1819045618190531-
GWHAAZE00000002exon1818959418189787-
GWHAAZE00000002exon1818675718186920-
GWHAAZE00000002exon1818660418186676-
GWHAAZE00000002exon1818564618185759-
GWHAAZE00000002exon1818536718185447-
GWHAAZE00000002exon1818516318185222-
GWHAAZE00000002exon1818438718184470-
GWHAAZE00000002exon1818415518184297-
GWHAAZE00000002exon1818335918183449-
GWHAAZE00000002CDS1819472218194731-
GWHAAZE00000002CDS1819455218194595-
GWHAAZE00000002CDS1819438218194457-
GWHAAZE00000002CDS1819412318194291-
GWHAAZE00000002CDS1819365418193831-
GWHAAZE00000002CDS1819346318193519-
GWHAAZE00000002CDS1819299318193136-
GWHAAZE00000002CDS1819264618192726-
GWHAAZE00000002CDS1819213818192225-
GWHAAZE00000002CDS1819062218190959-
GWHAAZE00000002CDS1819045618190531-
GWHAAZE00000002CDS1818959418189787-
GWHAAZE00000002CDS1818675718186920-
GWHAAZE00000002CDS1818660418186676-
GWHAAZE00000002CDS1818564618185759-
GWHAAZE00000002CDS1818536718185447-
GWHAAZE00000002CDS1818516318185222-
GWHAAZE00000002CDS1818438718184470-
GWHAAZE00000002CDS1818415518184297-
GWHAAZE00000002CDS1818335918183449-
Transcript Sequence

Network for GWHGAAZE006026

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13625.7Helicase_C_3671615.40E-27
PF04851.16ResIII2674232.70E-14
PF16203.6ERCC3_RAD25_C4496979.10E-116
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10843ERCC3, XPB Basal transcription factors map03022
Nucleotide excision repairmap03420

Gene Ontology

GO term OntologyName
GO:0006289biological_processnucleotide-excision repair
GO:0006367biological_processtranscription initiation from RNA polymerase II promoter
GO:0003677molecular_functionDNA binding
GO:0005524molecular_functionATP binding
GO:0016787molecular_functionhydrolase activity
GO:0003678molecular_functionDNA helicase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.581
SRR3591706second leaf9.873
SRR3591707mature leaf13.524
SRR3591708Shoot apex16.039
SRR3591709Stem15.045
SRR3591710White floral bud12.504
SRR3591711White flower23.443
SRR3591712Green floral bud10.872
SRR3591713Yellow flower19.533
SRP173429 SRR8316895Juvenile bud stage 10.091
SRR8316896Juvenile bud stage 13.121
SRR8316897Juvenile bud stage 6.387
SRR8316894Third green stage 5.517
SRR8316900Third green stage 12.083
SRR8316901Third green stage 11.088
SRR8316898Complete white stage 3.503
SRR8316899Complete white stage 19.862
SRR8316903Complete white stage 6.865
SRR8316902Silver flowering stage9.016
SRR8316904Silver flowering stage11.491
SRR8316905Silver flowering stage4.927
SRR8316906Gold flowering stage 22.284
SRR8316907Gold flowering stage 19.582
SRR8316908Gold flowering stage 24.293
SRP132670SRR6706286Control12.580
SRR6706287Light intensity 50%13.011
SRR6706288Light intensity 20%14.161
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.656
CNS0095593Slightly white alabastrum(diploid) 211.288
CNS0095594Slightly white alabastrum(diploid) 39.769
CNS0095595Whole white alabastrum(diploid) 29.376
CNS0095596Whole white alabastrum(diploid) 38.314
CNS0095597Whole white alabastrum(diploid) 49.047
CNS0095598Silvery flower (diploied) 120.903
CNS0095599Silvery flower (diploied) 216.656
CNS0095600Silvery flower (diploied) 319.943
CNS0095601Golden flower (diploid) 117.688
CNS0095602Golden flower (diploid) 223.070
CNS0095603Golden flower (diploid) 321.979
CNS0095604Slightly white alabastrum(tetraploid) 113.135
CNS0095605Slightly white alabastrum(tetraploid) 211.077
CNS0095606Slightly white alabastrum(tetraploid) 328.746
CNS0095607Whole white alabastrum(tetraploid) 18.865
CNS0095608Whole white alabastrum(tetraploid) 25.464
CNS0095609Whole white alabastrum(tetraploid) 313.528
CNS0095610Silvery flower (tetraploid) 126.482
CNS0095611Silvery flower (tetraploid) 230.596
CNS0095612Silvery flower (tetraploid) 334.030
CNS0095613Golden flower (tetraploid) 114.281
CNS0095614Golden flower (tetraploid) 219.174
CNS0095615Golden flower (tetraploid) 313.166
CRA001975CRR073297Stem 112.651
CRR073298Stem 211.268
CRR073299Stem 312.003
CRR073300Leaf 111.315
CRR073301Leaf 28.460
CRR073302Leaf 38.307
CRR073303Juvenile bud 18.320
CRR073304Juvenile bud 25.615
CRR073305Juvenile bud 312.100
CRR073306Third green 16.437
CRR073307Third green 23.870
CRR073308Third green 35.919
CRR073309Second white 122.038
CRR073310Second white 228.249
CRR073311Second white 331.623
CRR073312Silver flowering 127.672
CRR073313Silver flowering 223.274
CRR073314Silver flowering 321.132
CRR073315Gold flowering 110.205
CRR073316Gold flowering 214.934
CRR073317Gold flowering 311.046
CRR073318Tawny withering 18.404
CRR073319Tawny withering 27.411
CRR073320Tawny withering 37.556