Gene detail

Detail information of GWHGAAZE006027

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002298020.1	1.6903E-177	hypothetical protein POPTR_0001s09660g [Populus trichocarpa]
Swissprot	tr\|O81742\|APBLC_ARATH	5E-170	Beta-adaptin-like protein C
trEMBL	tr\|B9GKF2\|B9GKF2_POPTR	6E-178	Uncharacterized protein {ECO:0000313\|EMBL:EEE82825.1}
TAIR10	AT4G23460.1	6E-142	Adaptin family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	18206396	18210027	+
GWHAAZE00000002	mRNA	18206396	18210027	+
GWHAAZE00000002	exon	18206396	18206536	+
GWHAAZE00000002	exon	18207438	18207500	+
GWHAAZE00000002	exon	18207800	18208026	+
GWHAAZE00000002	exon	18208742	18208877	+
GWHAAZE00000002	exon	18209038	18209111	+
GWHAAZE00000002	exon	18209188	18209311	+
GWHAAZE00000002	exon	18209411	18209521	+
GWHAAZE00000002	exon	18209881	18210027	+
GWHAAZE00000002	CDS	18206396	18206536	+
GWHAAZE00000002	CDS	18207438	18207500	+
GWHAAZE00000002	CDS	18207800	18208026	+
GWHAAZE00000002	CDS	18208742	18208877	+
GWHAAZE00000002	CDS	18209038	18209111	+
GWHAAZE00000002	CDS	18209188	18209311	+
GWHAAZE00000002	CDS	18209411	18209521	+
GWHAAZE00000002	CDS	18209881	18210027	+

Transcript Sequence
>GWHTAAZE006035 ATGACTGTTGGGAAAGATGTTTCGTCATTGTTCACCGATGTTGTCCAGTGCATGCAAACAGAAAATTTGGAGCTCAAAAAGCTTGTTTACTTGTATCTCATTAATTATGCAAAAAGCCAGCCTGACTTGGCAATACTTGCGGATTCACAGGAGCCAAATCCTTTGATTCGTGCTTTGGCTGTTCGGACAATGGGATGCATTCGCACAGCAGCTATATGTGTTGCTAAACTTTATGACATAAATACTGAGCTAGTTGAGGATAAGGGATTTCTTGAAGCCCTCAGGGATCTGATATCTGATAATAACCCAATGGTTGTAGCCACCGCTGTTGCTGCTCTTGCGTATATTCAAGATAACAGTGGCAGACCTATCTTCGAAATTATCAGCCACACACTTGCAAAGCTCCTTACCGCTCTAAATGAATGCACTGAGTGGGGCCAAGTTTTCATACTAGATGCTCTTTCCAAGTGCAAGGAAACCGATGCTCATGAAGCTGAAAATATTGTGGAGCGAGTTACTCCGCGACTACAACATGCAAATTATGCAGTTGTTCTTTTAGCTATCAAGATGATCCTTCAACAAATGAAACTCATAACCAATACCGATGTGATTCGAAATCTTTGCAAGAAAATGGCTCCTCCACGGCCTACGATCCTTACCCATGAATTCAAAGTGTTCTTTTACAAGTACAATGATCCAACTTACGTGACGATGGAGAAGTTAGAAATTATGATAAAACTTGCTTCAGACCGAAATGTAGACCAGGTTTCGTTGGAGTTCAAAGAGTATGCCACTGAAGCAGACGTAGAATTTGTCAGAAAAGTTGTTCGTGCTATTGGACGTTGTGCCATCAAAGTTAGAAAGAGCAGCAGAGCGGCATCAATGATCTGGATAATTGGTGAATATGCAGAAATAATTGATAATGCTGATGAGCTCCTTGAAAGCTTTTTGGAGACTTTCCCTGAAGAACCTGCACAAGTCCAGTTGCAGTTGCTGACAGCAATAGTCAAAACTTTTTCTTAA

Network for GWHGAAZE006027

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01602.21	Adaptin_N	68	289	1.80E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12392	AP1B1	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0030117	cellular_component	membrane coat

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.391
	SRR3591706	second leaf	1.725
	SRR3591707	mature leaf	2.516
	SRR3591708	Shoot apex	1.195
	SRR3591709	Stem	4.525
	SRR3591710	White floral bud	2.498
	SRR3591711	White flower	5.091
	SRR3591712	Green floral bud	1.742
	SRR3591713	Yellow flower	6.479
SRP173429	SRR8316895	Juvenile bud stage	2.395
	SRR8316896	Juvenile bud stage	3.535
	SRR8316897	Juvenile bud stage	1.110
	SRR8316894	Third green stage	2.288
	SRR8316900	Third green stage	6.669
	SRR8316901	Third green stage	6.552
	SRR8316898	Complete white stage	7.029
	SRR8316899	Complete white stage	8.592
	SRR8316903	Complete white stage	10.413
	SRR8316902	Silver flowering stage	12.482
	SRR8316904	Silver flowering stage	19.540
	SRR8316905	Silver flowering stage	8.080
	SRR8316906	Gold flowering stage	30.039
	SRR8316907	Gold flowering stage	24.094
	SRR8316908	Gold flowering stage	25.333
SRP132670	SRR6706286	Control	2.212
	SRR6706287	Light intensity 50%	4.217
	SRR6706288	Light intensity 20%	3.710
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.637
	CNS0095593	Slightly white alabastrum(diploid) 2	4.519
	CNS0095594	Slightly white alabastrum(diploid) 3	3.794
	CNS0095595	Whole white alabastrum(diploid) 2	5.318
	CNS0095596	Whole white alabastrum(diploid) 3	7.019
	CNS0095597	Whole white alabastrum(diploid) 4	5.467
	CNS0095598	Silvery flower (diploied) 1	7.979
	CNS0095599	Silvery flower (diploied) 2	4.395
	CNS0095600	Silvery flower (diploied) 3	7.213
	CNS0095601	Golden flower (diploid) 1	5.663
	CNS0095602	Golden flower (diploid) 2	8.515
	CNS0095603	Golden flower (diploid) 3	8.989
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.524
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.165
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.763
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.167
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.163
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.786
	CNS0095610	Silvery flower (tetraploid) 1	25.285
	CNS0095611	Silvery flower (tetraploid) 2	17.741
	CNS0095612	Silvery flower (tetraploid) 3	41.770
	CNS0095613	Golden flower (tetraploid) 1	28.778
	CNS0095614	Golden flower (tetraploid) 2	20.850
	CNS0095615	Golden flower (tetraploid) 3	35.895
CRA001975	CRR073297	Stem 1	2.168
	CRR073298	Stem 2	2.189
	CRR073299	Stem 3	1.009
	CRR073300	Leaf 1	2.170
	CRR073301	Leaf 2	2.182
	CRR073302	Leaf 3	0.995
	CRR073303	Juvenile bud 1	1.212
	CRR073304	Juvenile bud 2	1.225
	CRR073305	Juvenile bud 3	0.656
	CRR073306	Third green 1	1.693
	CRR073307	Third green 2	1.289
	CRR073308	Third green 3	1.618
	CRR073309	Second white 1	4.066
	CRR073310	Second white 2	6.148
	CRR073311	Second white 3	6.727
	CRR073312	Silver flowering 1	4.870
	CRR073313	Silver flowering 2	2.548
	CRR073314	Silver flowering 3	2.609
	CRR073315	Gold flowering 1	1.102
	CRR073316	Gold flowering 2	1.531
	CRR073317	Gold flowering 3	0.400
	CRR073318	Tawny withering 1	1.252
	CRR073319	Tawny withering 2	1.147
	CRR073320	Tawny withering 3	0.953