Detail information of GWHGAAZE006028


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004245584.15.07562E-55PREDICTED: beta-adaptin-like protein C [Solanum lycopersicum]
Swissprottr|O81742|APBLC_ARATH4E-53Beta-adaptin-like protein C
trEMBLtr|K4CPC9|K4CPC9_SOLLC2E-55Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g081320.2.1}
TAIR10AT4G23460.14E-31Adaptin family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1821005318214613+
GWHAAZE00000002mRNA1821005318214613+
GWHAAZE00000002exon1821005318210061+
GWHAAZE00000002exon1821259318212685+
GWHAAZE00000002exon1821423018214613+
GWHAAZE00000002CDS1821005318210061+
GWHAAZE00000002CDS1821259318212685+
GWHAAZE00000002CDS1821423018214613+
Transcript Sequence

Network for GWHGAAZE006028

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12392AP1B1 Lysosome map04142

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.434
SRR3591706second leaf0.464
SRR3591707mature leaf0.091
SRR3591708Shoot apex0.026
SRR3591709Stem0.310
SRR3591710White floral bud0.518
SRR3591711White flower0.316
SRR3591712Green floral bud1.034
SRR3591713Yellow flower0.803
SRP173429 SRR8316895Juvenile bud stage 0.183
SRR8316896Juvenile bud stage 0.495
SRR8316897Juvenile bud stage 0.290
SRR8316894Third green stage 0.651
SRR8316900Third green stage 1.129
SRR8316901Third green stage 1.815
SRR8316898Complete white stage 0.170
SRR8316899Complete white stage 0.741
SRR8316903Complete white stage 0.716
SRR8316902Silver flowering stage0.461
SRR8316904Silver flowering stage1.112
SRR8316905Silver flowering stage0.170
SRR8316906Gold flowering stage 2.485
SRR8316907Gold flowering stage 1.753
SRR8316908Gold flowering stage 1.811
SRP132670SRR6706286Control0.375
SRR6706287Light intensity 50%0.820
SRR6706288Light intensity 20%0.682
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.305
CNS0095593Slightly white alabastrum(diploid) 20.601
CNS0095594Slightly white alabastrum(diploid) 30.247
CNS0095595Whole white alabastrum(diploid) 20.807
CNS0095596Whole white alabastrum(diploid) 31.012
CNS0095597Whole white alabastrum(diploid) 41.378
CNS0095598Silvery flower (diploied) 10.280
CNS0095599Silvery flower (diploied) 20.857
CNS0095600Silvery flower (diploied) 30.986
CNS0095601Golden flower (diploid) 10.172
CNS0095602Golden flower (diploid) 21.308
CNS0095603Golden flower (diploid) 30.905
CNS0095604Slightly white alabastrum(tetraploid) 12.124
CNS0095605Slightly white alabastrum(tetraploid) 22.273
CNS0095606Slightly white alabastrum(tetraploid) 30.840
CNS0095607Whole white alabastrum(tetraploid) 12.481
CNS0095608Whole white alabastrum(tetraploid) 23.342
CNS0095609Whole white alabastrum(tetraploid) 31.433
CNS0095610Silvery flower (tetraploid) 12.760
CNS0095611Silvery flower (tetraploid) 23.754
CNS0095612Silvery flower (tetraploid) 36.547
CNS0095613Golden flower (tetraploid) 13.172
CNS0095614Golden flower (tetraploid) 25.483
CNS0095615Golden flower (tetraploid) 38.952
CRA001975CRR073297Stem 10.094
CRR073298Stem 20.872
CRR073299Stem 30.118
CRR073300Leaf 10.641
CRR073301Leaf 22.136
CRR073302Leaf 30.403
CRR073303Juvenile bud 10.126
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.051
CRR073307Third green 20.015
CRR073308Third green 30.270
CRR073309Second white 10.075
CRR073310Second white 20.433
CRR073311Second white 33.141
CRR073312Silver flowering 10.102
CRR073313Silver flowering 20.408
CRR073314Silver flowering 30.145
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.129
CRR073317Gold flowering 30.030
CRR073318Tawny withering 10.548
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.290