Gene detail

Detail information of GWHGAAZE006031

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007209594.1	1.89025E-72	hypothetical protein PRUPE_ppa011402mg [Prunus persica]
Swissprot	tr\|Q8LE94\|RING3_ARATH	6E-25	E3 ubiquitin-protein ligase At3g02290
trEMBL	tr\|M5WND5\|M5WND5_PRUPE	7E-73	Uncharacterized protein {ECO:0000313\|EMBL:EMJ10793.1}
TAIR10	AT5G41350.1	2E-23	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	18253389	18255132	+
GWHAAZE00000002	mRNA	18253389	18255132	+
GWHAAZE00000002	exon	18253389	18253391	+
GWHAAZE00000002	exon	18253590	18254043	+
GWHAAZE00000002	exon	18254871	18254980	+
GWHAAZE00000002	exon	18255100	18255132	+
GWHAAZE00000002	CDS	18253389	18253391	+
GWHAAZE00000002	CDS	18253590	18254043	+
GWHAAZE00000002	CDS	18254871	18254980	+
GWHAAZE00000002	CDS	18255100	18255132	+

Transcript Sequence
>GWHTAAZE006039 ATGTATCCAAGAGTGGGGGAAGAGCATGAGCCCTTGTCATCTCACAATGCCGGAGCCTCTACACTCTCCACAGGACTCTTAGTTGATACAAATTTAGAAACTTCAATCCCTGACACTTATAGGCCCCCTCCAACACCTATACCTTATGATTCAAATCTTGTAGTACGTCCTAGAACTCCTCCAGTGGGCAATCGAGAAGGTAACAACAAGCCCGAAGCTGCTGCAGCACAAAGAACAGATACCGAAAATGTTGAAGAAGCGAATACTACTGGCACCACTAATGAAACAGAAGCTAAAGACTTAAAGGACCCTGACTGTAAAGTTCAAGCTGATATTGAACTTGTTGCTTTGAAAGAAGTGGAAGATGAACTTGAAAAATCCGGCGAACTTAAGAAGTCCGGTGAGCCTATTGTTTCAGCACCGGAAGAGGAGGAATGTTGTCCCACCTGCCTCGAAGAATATGATGCAGAAAATCCAAAAATTATCACAAAATGTGAGCATCATTTTCACCTCTCATGCATTCTTGAATGGTTGGAGAGAAGCGACACCTGTCCTGTGTGCGATCAGGAGATGATATTCGATCCCAACATTGATGGATAG

Network for GWHGAAZE006031

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12678.8	zf-rbx1	142	187	3.50E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.762
	SRR3591706	second leaf	16.889
	SRR3591707	mature leaf	28.533
	SRR3591708	Shoot apex	24.794
	SRR3591709	Stem	54.692
	SRR3591710	White floral bud	64.908
	SRR3591711	White flower	96.539
	SRR3591712	Green floral bud	36.965
	SRR3591713	Yellow flower	107.097
SRP173429	SRR8316895	Juvenile bud stage	14.486
	SRR8316896	Juvenile bud stage	27.128
	SRR8316897	Juvenile bud stage	10.369
	SRR8316894	Third green stage	9.082
	SRR8316900	Third green stage	24.015
	SRR8316901	Third green stage	27.243
	SRR8316898	Complete white stage	26.008
	SRR8316899	Complete white stage	55.402
	SRR8316903	Complete white stage	40.757
	SRR8316902	Silver flowering stage	38.277
	SRR8316904	Silver flowering stage	48.872
	SRR8316905	Silver flowering stage	28.145
	SRR8316906	Gold flowering stage	86.503
	SRR8316907	Gold flowering stage	75.298
	SRR8316908	Gold flowering stage	85.128
SRP132670	SRR6706286	Control	39.198
	SRR6706287	Light intensity 50%	39.436
	SRR6706288	Light intensity 20%	31.565
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.241
	CNS0095593	Slightly white alabastrum(diploid) 2	11.665
	CNS0095594	Slightly white alabastrum(diploid) 3	18.728
	CNS0095595	Whole white alabastrum(diploid) 2	13.197
	CNS0095596	Whole white alabastrum(diploid) 3	10.716
	CNS0095597	Whole white alabastrum(diploid) 4	11.888
	CNS0095598	Silvery flower (diploied) 1	33.999
	CNS0095599	Silvery flower (diploied) 2	23.230
	CNS0095600	Silvery flower (diploied) 3	62.114
	CNS0095601	Golden flower (diploid) 1	27.828
	CNS0095602	Golden flower (diploid) 2	54.383
	CNS0095603	Golden flower (diploid) 3	52.533
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.416
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.011
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.035
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.517
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.611
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.803
	CNS0095610	Silvery flower (tetraploid) 1	51.216
	CNS0095611	Silvery flower (tetraploid) 2	49.036
	CNS0095612	Silvery flower (tetraploid) 3	56.396
	CNS0095613	Golden flower (tetraploid) 1	42.655
	CNS0095614	Golden flower (tetraploid) 2	53.792
	CNS0095615	Golden flower (tetraploid) 3	78.300
CRA001975	CRR073297	Stem 1	28.621
	CRR073298	Stem 2	22.911
	CRR073299	Stem 3	24.587
	CRR073300	Leaf 1	27.166
	CRR073301	Leaf 2	26.428
	CRR073302	Leaf 3	21.398
	CRR073303	Juvenile bud 1	27.505
	CRR073304	Juvenile bud 2	24.521
	CRR073305	Juvenile bud 3	34.646
	CRR073306	Third green 1	40.920
	CRR073307	Third green 2	37.145
	CRR073308	Third green 3	40.627
	CRR073309	Second white 1	43.593
	CRR073310	Second white 2	58.653
	CRR073311	Second white 3	50.833
	CRR073312	Silver flowering 1	51.042
	CRR073313	Silver flowering 2	43.636
	CRR073314	Silver flowering 3	37.490
	CRR073315	Gold flowering 1	14.796
	CRR073316	Gold flowering 2	21.240
	CRR073317	Gold flowering 3	12.051
	CRR073318	Tawny withering 1	40.634
	CRR073319	Tawny withering 2	45.103
	CRR073320	Tawny withering 3	46.483