Detail information of GWHGAAZE006063


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009627099.15.78978E-54PREDICTED: pollen-specific protein SF3-like isoform X1 [Nicotiana tomentosiformis]
Swissprottr|Q500W4|PLI2C_ARATH2E-47LIM domain-containing protein PLIM2c {ECO:0000305}
trEMBLtr|A0A068UNA5|A0A068UNA5_COFCA1E-53Coffea canephora DH200=94 genomic scaffold, scaffold_41 {ECO:0000313|EMBL:CDP09772.1}
TAIR10AT3G61230.19E-39GATA type zinc finger transcription factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1877259818773864-
GWHAAZE00000002mRNA1877259818773864-
GWHAAZE00000002exon1877259818772702-
GWHAAZE00000002exon1877283218772851-
GWHAAZE00000002exon1877296718773063-
GWHAAZE00000002exon1877373018773864-
GWHAAZE00000002CDS1877373018773864-
GWHAAZE00000002CDS1877296718773063-
GWHAAZE00000002CDS1877283218772851-
GWHAAZE00000002CDS1877259818772702-
Transcript Sequence

Network for GWHGAAZE006063

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00412.23LIM10649.20E-12
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyOthers

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.083
SRR3591708Shoot apex0.356
SRR3591709Stem0.206
SRR3591710White floral bud21.808
SRR3591711White flower0.106
SRR3591712Green floral bud66.905
SRR3591713Yellow flower0.515
SRP173429 SRR8316895Juvenile bud stage 4.138
SRR8316896Juvenile bud stage 33.023
SRR8316897Juvenile bud stage 19.341
SRR8316894Third green stage 13.815
SRR8316900Third green stage 63.155
SRR8316901Third green stage 59.110
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.145
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.178
SRR8316904Silver flowering stage0.538
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control25.629
SRR6706287Light intensity 50%25.044
SRR6706288Light intensity 20%23.413
CNP0000432CNS0095592Slightly white alabastrum(diploid) 143.556
CNS0095593Slightly white alabastrum(diploid) 229.961
CNS0095594Slightly white alabastrum(diploid) 366.262
CNS0095595Whole white alabastrum(diploid) 248.877
CNS0095596Whole white alabastrum(diploid) 357.795
CNS0095597Whole white alabastrum(diploid) 456.833
CNS0095598Silvery flower (diploied) 10.383
CNS0095599Silvery flower (diploied) 20.364
CNS0095600Silvery flower (diploied) 30.722
CNS0095601Golden flower (diploid) 10.013
CNS0095602Golden flower (diploid) 20.378
CNS0095603Golden flower (diploid) 30.200
CNS0095604Slightly white alabastrum(tetraploid) 184.801
CNS0095605Slightly white alabastrum(tetraploid) 285.627
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 1128.894
CNS0095608Whole white alabastrum(tetraploid) 2143.908
CNS0095609Whole white alabastrum(tetraploid) 383.873
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.874
CNS0095612Silvery flower (tetraploid) 32.646
CNS0095613Golden flower (tetraploid) 10.313
CNS0095614Golden flower (tetraploid) 20.073
CNS0095615Golden flower (tetraploid) 32.003
CRA001975CRR073297Stem 18.997
CRR073298Stem 215.019
CRR073299Stem 37.346
CRR073300Leaf 121.576
CRR073301Leaf 221.773
CRR073302Leaf 323.254
CRR073303Juvenile bud 117.704
CRR073304Juvenile bud 235.543
CRR073305Juvenile bud 30.401
CRR073306Third green 13.896
CRR073307Third green 28.687
CRR073308Third green 33.920
CRR073309Second white 10.000
CRR073310Second white 22.149
CRR073311Second white 30.574
CRR073312Silver flowering 14.478
CRR073313Silver flowering 22.092
CRR073314Silver flowering 31.415
CRR073315Gold flowering 16.008
CRR073316Gold flowering 21.335
CRR073317Gold flowering 36.694
CRR073318Tawny withering 14.259
CRR073319Tawny withering 22.974
CRR073320Tawny withering 32.858