Gene detail

Detail information of GWHGAAZE006068

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002271860.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 [Vitis vinifera]
Swissprot	tr\|C0LGH8\|Y1634_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At1g63430 (Precursor)
trEMBL	tr\|D7TW14\|D7TW14_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34689.3}
TAIR10	AT1G63430.1	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	18868050	18872517	+
GWHAAZE00000002	mRNA	18868050	18872517	+
GWHAAZE00000002	exon	18868050	18868134	+
GWHAAZE00000002	exon	18868374	18868512	+
GWHAAZE00000002	exon	18868623	18868694	+
GWHAAZE00000002	exon	18868792	18868935	+
GWHAAZE00000002	exon	18869018	18869167	+
GWHAAZE00000002	exon	18870254	18870370	+
GWHAAZE00000002	exon	18870455	18870519	+
GWHAAZE00000002	exon	18870614	18870880	+
GWHAAZE00000002	exon	18870967	18871172	+
GWHAAZE00000002	exon	18871263	18871395	+
GWHAAZE00000002	exon	18871491	18871648	+
GWHAAZE00000002	exon	18871777	18871992	+
GWHAAZE00000002	exon	18872284	18872517	+
GWHAAZE00000002	CDS	18868050	18868134	+
GWHAAZE00000002	CDS	18868374	18868512	+
GWHAAZE00000002	CDS	18868623	18868694	+
GWHAAZE00000002	CDS	18868792	18868935	+
GWHAAZE00000002	CDS	18869018	18869167	+
GWHAAZE00000002	CDS	18870254	18870370	+
GWHAAZE00000002	CDS	18870455	18870519	+
GWHAAZE00000002	CDS	18870614	18870880	+
GWHAAZE00000002	CDS	18870967	18871172	+
GWHAAZE00000002	CDS	18871263	18871395	+
GWHAAZE00000002	CDS	18871491	18871648	+
GWHAAZE00000002	CDS	18871777	18871992	+
GWHAAZE00000002	CDS	18872284	18872517	+

Transcript Sequence
>GWHTAAZE006076 ATGAGAACTCATACTCCATTTCAATTTGTATGGGTTCTTTTGGGTCTATTCCTTGTGAACTGTGACGCATTTGCATCAAATGAAGTTTATGCTCTTAGTGCCTTCAAGGAAGCTATATTTGAGGACCCATTTCTTGTTTTGTCAAATTGGAATGCCCTAGATGCAGATCCTTGTGATTGGTCTGGCATTTCTTGTTCTATGGCTCGAGATCGTGTCATCAAGCTTAATGTTTCTGGGTCTTCTTTGAAGGGATTTATTGCTCCAGAATTGTGTCTACTCTCTTCCTTGCAAGAACTAATTTTGCACGGCAACGGTCTAATTAGTATAATACCCAAAGAAATTGGATTGCTGAGAAACCTCAAGGTCTTGGATTTGGGGGCAAACCAGCTATGTGGGCCGATTCCTCCCGAAATTGGGAATTTAATCAACATTGTGAAAATAAACCTTCAATCCAATGGGTTAACTGGAAGGGTGCCTGCTGAACTTGGCAATTTGAAGCTGCTTGAGGAACTTCGGCTGGACAGGAATAAGCTTCAAGGAGTTGTACCTGGTAGTAATGATTCGAACTCGGTGGCCAACCTAAATGGAATGTATGTATCTTTAAGGAACCCTTCGGGTTTTTGCCACTCATCTCAGTTAAAAGTTGCAGACTTCTCATTCAACTTCTTGGTTGGGAGTATACCCAAATGCTTGGCATATCTTCCAAGCTCCAGTTTTCAAGGGAACTGCCTTCAAGATACAGGTCCCAGACAACGGCCTACTCAGCAATGTGGCAGTCCACCACCAGCCAAAAATCATCCAGGAGTCAACAGGAAGCACGGGCCTGTTGAAGAAGATAATAATAATAGATCAAAACATCAGGCGGCCACCTCGAAACCCGCGTGGCTTTTAGCTCTGGAGATAGTGACAGGTGTCATGGTGGGTTCACTCTTCATCGTGGCTCTTCTTGCTGCTTCTCAGAAATGCAAAAGCAAACCTTCTCTCATCATCCCTTGGAAGAAATCAACAATTGCCAAGGACCATATGGCAATTTACATAGATTCGGAGATGTTGAAGGATGTATGGAAATTCAGCAGACAAGAACTTGAAGTAGCATGTGAAGATTTCAGCAACATTATCGGGTCCTCTTTGGACAGTCTCGTCTACAAAGGCACAATGAATGGCGGACCTGAGATTGCCGTCATATCTCTGTGTGTCAAGGAAGAGCAGTGGACGGGTTATCTCGAGCTCTATTTTCAGAAAGAGGTGGCAGATTTGGCAAGACTAAATCACGAGAATACAGGGAAATTACTGGGTTGTTGTAGAGAGAGCGATCCATTTACGAGAATGCTGGTGTTTGAATATGCGTCTAATGGGACATTGTATGAGCACTTGCACTACGGAGAAGGATGCCAACTCAGTTGGACCCGACGAATGAAAATTGTTATAGGCATCGCTAAGGGACTAAAGTATCTTCACACAGAAATCGAGCCACCATTTACTATATCTCAGCTGAATTCTAGTGCCGTCTATCTTACTGAAGACTTTTTGCCCAAGCTAGTTGATTTTGAGAGTTGGAAAACGATTGTTTCAAGATCAGAAAAGAACACTGGCGCTTTCGGCCAAGAAGGTGCTATTTGTGTTCTTCCAAATTCACTAGAGCAGCGCCATCTGGATATTCAGGGGAATGTTTATGCATTTGGCATACTTTTACTTGAAATAATAAGTGGCCGACCTCCATACTGCAAGGAAAAGGGATGCTTGGTAGATTGGGCCAAGGAATTTCTTGAAGTGCCGGAAGTAATGTCTAACATAGTCGACCCGGAGTTGAAGCATTTCGAGTTGGATGACCTAAAGGTGATTTGCGAGGTGGTGAGCCTTTGCTTTAATCAAAGTACCCCCAGCCCAGTGTCAATGCAGGAACTTTGCAACATGTTGGAGAGCAATATTGACACGTCCGTCTCTTCTGAGCTTAAGGCGTCATGGGCCGAGCTTGCACTTTCGTGA

Network for GWHGAAZE006068

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	26	66	6.80E-09
PF07714.18	PK_Tyr_Ser-Thr	371	576	2.80E-19

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VI-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	64.878
	SRR3591706	second leaf	39.622
	SRR3591707	mature leaf	12.195
	SRR3591708	Shoot apex	36.423
	SRR3591709	Stem	52.616
	SRR3591710	White floral bud	20.054
	SRR3591711	White flower	9.590
	SRR3591712	Green floral bud	12.653
	SRR3591713	Yellow flower	0.796
SRP173429	SRR8316895	Juvenile bud stage	5.495
	SRR8316896	Juvenile bud stage	6.004
	SRR8316897	Juvenile bud stage	1.921
	SRR8316894	Third green stage	2.272
	SRR8316900	Third green stage	4.536
	SRR8316901	Third green stage	4.672
	SRR8316898	Complete white stage	2.640
	SRR8316899	Complete white stage	5.768
	SRR8316903	Complete white stage	5.270
	SRR8316902	Silver flowering stage	1.338
	SRR8316904	Silver flowering stage	4.456
	SRR8316905	Silver flowering stage	2.970
	SRR8316906	Gold flowering stage	3.226
	SRR8316907	Gold flowering stage	1.648
	SRR8316908	Gold flowering stage	3.672
SRP132670	SRR6706286	Control	3.144
	SRR6706287	Light intensity 50%	3.514
	SRR6706288	Light intensity 20%	3.983
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.922
	CNS0095593	Slightly white alabastrum(diploid) 2	4.152
	CNS0095594	Slightly white alabastrum(diploid) 3	3.964
	CNS0095595	Whole white alabastrum(diploid) 2	2.565
	CNS0095596	Whole white alabastrum(diploid) 3	3.880
	CNS0095597	Whole white alabastrum(diploid) 4	2.288
	CNS0095598	Silvery flower (diploied) 1	4.870
	CNS0095599	Silvery flower (diploied) 2	4.541
	CNS0095600	Silvery flower (diploied) 3	1.576
	CNS0095601	Golden flower (diploid) 1	3.640
	CNS0095602	Golden flower (diploid) 2	2.831
	CNS0095603	Golden flower (diploid) 3	2.434
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.134
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.350
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.161
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.497
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.476
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.476
	CNS0095610	Silvery flower (tetraploid) 1	2.793
	CNS0095611	Silvery flower (tetraploid) 2	2.630
	CNS0095612	Silvery flower (tetraploid) 3	13.020
	CNS0095613	Golden flower (tetraploid) 1	0.988
	CNS0095614	Golden flower (tetraploid) 2	1.020
	CNS0095615	Golden flower (tetraploid) 3	1.963
CRA001975	CRR073297	Stem 1	11.126
	CRR073298	Stem 2	9.682
	CRR073299	Stem 3	10.963
	CRR073300	Leaf 1	7.429
	CRR073301	Leaf 2	5.902
	CRR073302	Leaf 3	6.859
	CRR073303	Juvenile bud 1	4.558
	CRR073304	Juvenile bud 2	8.404
	CRR073305	Juvenile bud 3	6.669
	CRR073306	Third green 1	17.153
	CRR073307	Third green 2	18.220
	CRR073308	Third green 3	17.394
	CRR073309	Second white 1	5.408
	CRR073310	Second white 2	5.666
	CRR073311	Second white 3	2.829
	CRR073312	Silver flowering 1	4.656
	CRR073313	Silver flowering 2	4.668
	CRR073314	Silver flowering 3	4.362
	CRR073315	Gold flowering 1	7.192
	CRR073316	Gold flowering 2	9.366
	CRR073317	Gold flowering 3	7.947
	CRR073318	Tawny withering 1	19.214
	CRR073319	Tawny withering 2	15.965
	CRR073320	Tawny withering 3	28.426