Gene detail

Detail information of GWHGAAZE006072

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002269706.1	0	PREDICTED: serine racemase isoform X1 [Vitis vinifera]
Swissprot	tr\|Q2PGG3\|SRR_ARATH	3E-162	Serine racemase
trEMBL	tr\|D7TW10\|D7TW10_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34685.3}
TAIR10	AT4G11640.1	3E-127	serine racemase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	18908267	18910564	-
GWHAAZE00000002	mRNA	18908267	18910564	-
GWHAAZE00000002	exon	18908267	18908474	-
GWHAAZE00000002	exon	18908581	18908767	-
GWHAAZE00000002	exon	18908891	18908964	-
GWHAAZE00000002	exon	18909328	18909558	-
GWHAAZE00000002	exon	18909650	18909736	-
GWHAAZE00000002	exon	18910389	18910564	-
GWHAAZE00000002	CDS	18910389	18910564	-
GWHAAZE00000002	CDS	18909650	18909736	-
GWHAAZE00000002	CDS	18909328	18909558	-
GWHAAZE00000002	CDS	18908891	18908964	-
GWHAAZE00000002	CDS	18908581	18908767	-
GWHAAZE00000002	CDS	18908267	18908474	-

Transcript Sequence
>GWHTAAZE006080 ATGGAAGCAAAGAGCCAAACAACCAGTGACAAGTATGCTGCTGATATTTGTTCCATACGGGAAGCACAAGTACGCATCAATCCATTTATACACGTAACTCCCGTTGTATCCTCGGAGACTCTGAATTCTTTAGCTGGAAGAAAGCTATTTTTCAAATGTGAATGTTTTCAGAAGGGTGGAGCTTTCAAATTCAGAGGTGCCTCCAATGCTATATTTTCACTTGATGATGATCAGGCAGCTAAGGGAGTTGTAACTCATAGCAGTGGTAACCATGCTGCGGCAGTTTCTTTGGCTGCAAAACTACGGGGAATCCCAGCATATATAGTTATACCAAAAAATGCTCCGAAATGCAAAGTTGAGAATGTAATTCGTTATGGTGGTCAGGTTATTTGGAGTGAGCCCACCATGCAGTCTAGAGAGGAGAATGCAATGAAGGTTTTGCAAGAGACTGGGGCAGTTCTTGTTCATCCATATAATGATCGCCGCATCATAAGTGGACAGGGTACCATATCACTGGAACTTCTAAAGCAAGCCCCACAAATAGACACTATTATAGTTCCAATAAGTGGGGGTGGTTTAATATCAGGGGTGGCATTGGGTGCCAAGTCCATAAATCCCGCCATTCGAGTATTGGCTGCCGAACCAAGGGGAGCAAATGATGCAGCCCTGTCCAAAGCAGCCGGCACAATTGTAACGTTGCCCGAGACTAACACCATTGCGGACGGACTTAGAGCTTCTCTTGGGGATCTGACTTGGCCAATCGTACAGGATCTCGTTGATGATGTCATAATTGTGGACGATAAAGAAATAATTGAAGCTATGAGACTTTGTTACGAGATTCTTAAGGTTGCAGTAGAACCTAGCGGAGCCATAGGCCTCGCGGCTGTTCTATCTGATAGTTTCAGAAAAAAATACCGCTTGGAAGGACTGTCACTACATCGGAATTGTCCTCTCAGGAGGTAA

Network for GWHGAAZE006072

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00291.26	PALP	27	300	6.50E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12235	SRR	Metabolic pathways	map01100
K12235	SRR	Glycine, serine and threonine metabolism	map00260

Gene Ontology

GO term	Ontology	Name
GO:0006520	biological_process	cellular amino acid metabolic process
GO:0030170	molecular_function	pyridoxal phosphate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.918
	SRR3591706	second leaf	7.044
	SRR3591707	mature leaf	7.932
	SRR3591708	Shoot apex	8.695
	SRR3591709	Stem	19.577
	SRR3591710	White floral bud	8.014
	SRR3591711	White flower	8.985
	SRR3591712	Green floral bud	10.578
	SRR3591713	Yellow flower	9.257
SRP173429	SRR8316895	Juvenile bud stage	7.553
	SRR8316896	Juvenile bud stage	11.763
	SRR8316897	Juvenile bud stage	4.058
	SRR8316894	Third green stage	3.673
	SRR8316900	Third green stage	15.323
	SRR8316901	Third green stage	13.209
	SRR8316898	Complete white stage	11.625
	SRR8316899	Complete white stage	27.175
	SRR8316903	Complete white stage	13.150
	SRR8316902	Silver flowering stage	10.698
	SRR8316904	Silver flowering stage	11.529
	SRR8316905	Silver flowering stage	4.556
	SRR8316906	Gold flowering stage	28.100
	SRR8316907	Gold flowering stage	26.424
	SRR8316908	Gold flowering stage	28.526
SRP132670	SRR6706286	Control	18.991
	SRR6706287	Light intensity 50%	19.033
	SRR6706288	Light intensity 20%	20.746
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.306
	CNS0095593	Slightly white alabastrum(diploid) 2	10.375
	CNS0095594	Slightly white alabastrum(diploid) 3	12.592
	CNS0095595	Whole white alabastrum(diploid) 2	12.809
	CNS0095596	Whole white alabastrum(diploid) 3	10.733
	CNS0095597	Whole white alabastrum(diploid) 4	9.542
	CNS0095598	Silvery flower (diploied) 1	18.237
	CNS0095599	Silvery flower (diploied) 2	13.946
	CNS0095600	Silvery flower (diploied) 3	24.193
	CNS0095601	Golden flower (diploid) 1	13.283
	CNS0095602	Golden flower (diploid) 2	18.622
	CNS0095603	Golden flower (diploid) 3	20.274
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.757
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.447
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.573
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.202
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.299
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.458
	CNS0095610	Silvery flower (tetraploid) 1	23.644
	CNS0095611	Silvery flower (tetraploid) 2	26.165
	CNS0095612	Silvery flower (tetraploid) 3	21.541
	CNS0095613	Golden flower (tetraploid) 1	15.545
	CNS0095614	Golden flower (tetraploid) 2	20.390
	CNS0095615	Golden flower (tetraploid) 3	16.830
CRA001975	CRR073297	Stem 1	11.496
	CRR073298	Stem 2	7.261
	CRR073299	Stem 3	8.438
	CRR073300	Leaf 1	10.699
	CRR073301	Leaf 2	9.294
	CRR073302	Leaf 3	9.872
	CRR073303	Juvenile bud 1	12.110
	CRR073304	Juvenile bud 2	12.786
	CRR073305	Juvenile bud 3	11.600
	CRR073306	Third green 1	2.178
	CRR073307	Third green 2	2.496
	CRR073308	Third green 3	2.405
	CRR073309	Second white 1	3.870
	CRR073310	Second white 2	8.380
	CRR073311	Second white 3	7.598
	CRR073312	Silver flowering 1	3.236
	CRR073313	Silver flowering 2	1.483
	CRR073314	Silver flowering 3	2.632
	CRR073315	Gold flowering 1	10.021
	CRR073316	Gold flowering 2	13.714
	CRR073317	Gold flowering 3	10.583
	CRR073318	Tawny withering 1	7.962
	CRR073319	Tawny withering 2	8.751
	CRR073320	Tawny withering 3	12.703