Gene detail

Detail information of GWHGAAZE006078

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP09749.1	2.0159E-98	unnamed protein product [Coffea canephora]
Swissprot	tr\|O23814\|GPX4_SPIOL	4E-93	Probable phospholipid hydroperoxide glutathione peroxidase
trEMBL	tr\|A0A068UNF2\|A0A068UNF2_COFCA	8E-99	Glutathione peroxidase {ECO:0000256\|RuleBase:RU000499}
TAIR10	AT4G11600.1	1E-75	glutathione peroxidase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	19021089	19031169	+
GWHAAZE00000002	mRNA	19021089	19031169	+
GWHAAZE00000002	exon	19021089	19021139	+
GWHAAZE00000002	exon	19022210	19022286	+
GWHAAZE00000002	exon	19023223	19023284	+
GWHAAZE00000002	exon	19023444	19023562	+
GWHAAZE00000002	exon	19024194	19024361	+
GWHAAZE00000002	exon	19025272	19025389	+
GWHAAZE00000002	exon	19027291	19027621	+
GWHAAZE00000002	exon	19029958	19030019	+
GWHAAZE00000002	exon	19030121	19030239	+
GWHAAZE00000002	exon	19030471	19030638	+
GWHAAZE00000002	exon	19031002	19031169	+
GWHAAZE00000002	CDS	19021089	19021139	+
GWHAAZE00000002	CDS	19022210	19022286	+
GWHAAZE00000002	CDS	19023223	19023284	+
GWHAAZE00000002	CDS	19023444	19023562	+
GWHAAZE00000002	CDS	19024194	19024361	+
GWHAAZE00000002	CDS	19025272	19025389	+
GWHAAZE00000002	CDS	19027291	19027621	+
GWHAAZE00000002	CDS	19029958	19030019	+
GWHAAZE00000002	CDS	19030121	19030239	+
GWHAAZE00000002	CDS	19030471	19030638	+
GWHAAZE00000002	CDS	19031002	19031034	+
GWHAAZE00000002	three_prime_UTR	19031035	19031169	+

Transcript Sequence
>GWHTAAZE006086 ATGTCCGGCCAAGCCAGCAAGCCCCAATCTATCCACGAATTCACCGTCAAGGATGCTAGAGGTAATGATGTGGACCTGAGCCAGTACAAGGGAAAAGTTCTACTGATTGTTAATGTTGCATCCCAATGTGGCCTGACAAATTCGAATTACACAGAGTTGGCACAGTTGTATGAGAAGTATAAAGAACAAGGCTTGGAGATTCTGGCATTTCCATGCAATCAGTTCGGATCACAGGAGCCAGGGACTAATGAAGAGATTCAGCAGTTCGTTTGCACTCGCTTTAAGGCTGAATATCCAATATTCGACAAGGTGGAGGTGAATGGATCGAATGCAAACCCAATATACAAGTTCCTCAAGTCGAACAAAGGTGGACTGTTCGGTGACAGTATCAAGTGGAACTTCACCAAGTTCCTTGTTGATAAAGAAGGCAATGTTGTGGATCGCTATGCTCCTACAACTTCTCCTTTTAGCATCGAGAATCTGGCTATCCGGCCAGTTGGCTTCTTAATAGCTGCAAAGAAGAGATCGCAAGATGAAGCCAAAACTCGGATGTCACATTACGAGGGACCTACCAATTTTCCAGCTAAGCTGATCAACACTTGCCTTTTCGTCCGCGAGACACTCCGAATCAGCGCCAACCTCGCCTCCGCTCCTCCGTCGACGGGGCAGGATATTAACGGATTGAGGTCCGGTAATGCGAGCTATGGATTGGTTGAGGAGCGATTCGTTGATTCGAGCTCGAGTTTGGTGTGCTATGAGGAGATCGATGGCCGGAGGTGGAAGTATTTGGCGCAGAACAGTGATTTTAAGCAGTTTAAGAAGGGCTCGATACGTGCTGTTAGCTTACAGAATCCACAGACTCTTGTTGATGTCAGTTTCTTCTTCTCTATGCACAGAATCAACTTTCAATTAGAATCAATCGCCAATGGAATGACCAACTCAAACTATGCTGACCTGAATCAACTGTACGAAAAATATAAAGATCAAGGTTTTGAGATATTAGCGTTTCCTTGCAATCAATTTGGCGAGGAGGAACCAGGAAGCAATGATCAAATCTTAGAATTTGTGTGCACCCGTTTCAAATCAGAATTTCCCATCTTTGATAAGATTGAAGTGAATGGCGAAAATACAGCTCCACTGTACAAGTTCTTGAAGTCAGGCAAGTGGGGAATTATAGGGGACGATATCCAGTGGAACTTTGCTAAATTCTTGGTTGATAAGAACGGGCAGGCTGTTGATCGCTATTACCCAACAACTTCCCCTCTTACCATTGAGAGAGATATAAAGAAGTTATTGGGCGTCTTATAAATCCGGAGGACATAGAGAAGGCTTTTTGAAGCTAATTTTGAAGCAAAAACATCACAGTTGCTGCTCCTCCTTGGTTTGCTTTTGTAATGCAGTGGTGTGCCATACTGCCATTGATGTATATGAAACTTGTACTCG

Network for GWHGAAZE006078

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00255.20	GSHPx	11	119	2.00E-43
PF00255.20	GSHPx	310	385	6.20E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00432	gpx, btuE, bsaA	Metabolic pathways	map01100
		Arachidonic acid metabolism	map00590
		Glutathione metabolism	map00480
		Thyroid hormone synthesis	map04918

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004602	molecular_function	glutathione peroxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	75.951
	SRR3591706	second leaf	34.640
	SRR3591707	mature leaf	57.236
	SRR3591708	Shoot apex	36.679
	SRR3591709	Stem	105.145
	SRR3591710	White floral bud	189.934
	SRR3591711	White flower	298.047
	SRR3591712	Green floral bud	135.376
	SRR3591713	Yellow flower	348.675
SRP173429	SRR8316895	Juvenile bud stage	78.841
	SRR8316896	Juvenile bud stage	118.854
	SRR8316897	Juvenile bud stage	69.958
	SRR8316894	Third green stage	42.022
	SRR8316900	Third green stage	168.572
	SRR8316901	Third green stage	176.760
	SRR8316898	Complete white stage	138.940
	SRR8316899	Complete white stage	223.324
	SRR8316903	Complete white stage	182.717
	SRR8316902	Silver flowering stage	217.001
	SRR8316904	Silver flowering stage	246.229
	SRR8316905	Silver flowering stage	139.450
	SRR8316906	Gold flowering stage	388.161
	SRR8316907	Gold flowering stage	381.928
	SRR8316908	Gold flowering stage	406.977
SRP132670	SRR6706286	Control	118.574
	SRR6706287	Light intensity 50%	114.752
	SRR6706288	Light intensity 20%	118.346
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	120.524
	CNS0095593	Slightly white alabastrum(diploid) 2	114.209
	CNS0095594	Slightly white alabastrum(diploid) 3	106.377
	CNS0095595	Whole white alabastrum(diploid) 2	111.893
	CNS0095596	Whole white alabastrum(diploid) 3	114.710
	CNS0095597	Whole white alabastrum(diploid) 4	118.570
	CNS0095598	Silvery flower (diploied) 1	199.372
	CNS0095599	Silvery flower (diploied) 2	214.714
	CNS0095600	Silvery flower (diploied) 3	327.304
	CNS0095601	Golden flower (diploid) 1	194.270
	CNS0095602	Golden flower (diploid) 2	275.592
	CNS0095603	Golden flower (diploid) 3	265.220
	CNS0095604	Slightly white alabastrum(tetraploid) 1	97.044
	CNS0095605	Slightly white alabastrum(tetraploid) 2	88.746
	CNS0095606	Slightly white alabastrum(tetraploid) 3	93.597
	CNS0095607	Whole white alabastrum(tetraploid) 1	91.342
	CNS0095608	Whole white alabastrum(tetraploid) 2	124.703
	CNS0095609	Whole white alabastrum(tetraploid) 3	157.714
	CNS0095610	Silvery flower (tetraploid) 1	346.727
	CNS0095611	Silvery flower (tetraploid) 2	387.309
	CNS0095612	Silvery flower (tetraploid) 3	311.702
	CNS0095613	Golden flower (tetraploid) 1	321.186
	CNS0095614	Golden flower (tetraploid) 2	318.678
	CNS0095615	Golden flower (tetraploid) 3	322.461
CRA001975	CRR073297	Stem 1	84.136
	CRR073298	Stem 2	73.612
	CRR073299	Stem 3	80.653
	CRR073300	Leaf 1	122.435
	CRR073301	Leaf 2	137.763
	CRR073302	Leaf 3	144.198
	CRR073303	Juvenile bud 1	183.249
	CRR073304	Juvenile bud 2	202.140
	CRR073305	Juvenile bud 3	143.169
	CRR073306	Third green 1	259.584
	CRR073307	Third green 2	266.907
	CRR073308	Third green 3	236.255
	CRR073309	Second white 1	506.668
	CRR073310	Second white 2	360.007
	CRR073311	Second white 3	235.961
	CRR073312	Silver flowering 1	267.462
	CRR073313	Silver flowering 2	307.453
	CRR073314	Silver flowering 3	231.531
	CRR073315	Gold flowering 1	75.980
	CRR073316	Gold flowering 2	72.352
	CRR073317	Gold flowering 3	57.303
	CRR073318	Tawny withering 1	71.431
	CRR073319	Tawny withering 2	103.496
	CRR073320	Tawny withering 3	71.892