Gene detail

Detail information of GWHGAAZE006089

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007040220.1	0	Kinase protein with tetratricopeptide repeat domain isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9FHD7\|Y5126_ARATH	0	Probable serine/threonine-protein kinase At5g41260
trEMBL	tr\|A0A061G6D0\|A0A061G6D0_THECC	0	Kinase protein with tetratricopeptide repeat domain isoform 1 {ECO:0000313\|EMBL:EOY24722.1}
TAIR10	AT5G41260.1	1E-158	Protein kinase protein with tetratricopeptide repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	19155075	19161813	+
GWHAAZE00000002	mRNA	19155075	19161813	+
GWHAAZE00000002	exon	19155075	19155156	+
GWHAAZE00000002	exon	19155235	19155455	+
GWHAAZE00000002	exon	19156431	19156566	+
GWHAAZE00000002	exon	19158971	19159104	+
GWHAAZE00000002	exon	19159206	19159311	+
GWHAAZE00000002	exon	19160662	19160747	+
GWHAAZE00000002	exon	19161601	19161813	+
GWHAAZE00000002	CDS	19155075	19155156	+
GWHAAZE00000002	CDS	19155235	19155455	+
GWHAAZE00000002	CDS	19156431	19156566	+
GWHAAZE00000002	CDS	19158971	19159104	+
GWHAAZE00000002	CDS	19159206	19159311	+
GWHAAZE00000002	CDS	19160662	19160747	+
GWHAAZE00000002	CDS	19161601	19161813	+

Transcript Sequence
>GWHTAAZE006097 ATGGGATGCGAGTGTTCTAAACTCACCTTGTGCTGTGGGGCTTCAGACTCCAATGGATCAATTCCTGAAGCCCATCAAGCTGAAAACGAGGAGAAGAGTGAATCTAGTGGTTTGCCTGCATTCCGTGAATTCTCTGTTGAACAACTTAGGATGGCTACATCTGGATTTGCGGCGGAAAACATAGTCTCTGAACATGGGGAGAAGGCCCCGAATGTAGTTTATAAAGGGAAGTTGGAGAATCAAAGGCGGGTCGCTGTCAAACGCTTTAATAGATCTGCTTGGCCTGATGCCCGGCAGTTCATGGATGAAGCGAGAGCTGTTGGTCAACTCCGAAACCCCAGATTAGCCAATCTACTTGGCTGTTGTTGTGACGGTGATGAGAGGCTGCTTGTTGCAGAATTTATGCCCCACGAGACACTTGCCAAGCACCTATTTCATTGGGAAACACAACCGATGAAGTGGGCCATGCGTCTAAGGGTGGCATTATATCTTGCACAAGCTCTTGAATATTGTACTAGCAAAGGACGTGCCCTTTATCACGATTTAAATGCTTACAGAATAGTGTTTGATGATGATGGTAATCCCAGATTGTCGTGCTATGGATTGATGAAGAACAGCAGAGATGGAAAAAGTTATAGCACGAACCTAGCATTTACCCCTCCTGAGTACCTGAGGACTGGAAGAGTAACACCAGAAAGTGTCATGTATAGCTTTGGCACACTTTTGCTTGACCTTCTTAGTGGAAAACACATTCCTCCGAGCCATGCACTTGACTTGATAAGGGACAGGAATCTTCAGATGCTAACAGACTCTTGTTTGGAAGGCCAATTTTCTGTTGATGATGGAACAGAGTTGGTGCGTCTGGCTTCCAGATGTTTACAGTATGAGCCCCGTGAGCGGCCAAATCCAAAGTCATTAGTTGCCGCTTTGATTCCTCTTCAGAAGGAAACTGAGGTTGGTCATTCCCCAAGCGATTAA

Network for GWHGAAZE006089

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	72	309	1.00E-25

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
K14500	BSK	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.337
	SRR3591706	second leaf	21.063
	SRR3591707	mature leaf	15.139
	SRR3591708	Shoot apex	21.289
	SRR3591709	Stem	25.352
	SRR3591710	White floral bud	23.011
	SRR3591711	White flower	21.300
	SRR3591712	Green floral bud	24.231
	SRR3591713	Yellow flower	18.088
SRP173429	SRR8316895	Juvenile bud stage	13.670
	SRR8316896	Juvenile bud stage	16.324
	SRR8316897	Juvenile bud stage	8.289
	SRR8316894	Third green stage	8.960
	SRR8316900	Third green stage	22.834
	SRR8316901	Third green stage	25.993
	SRR8316898	Complete white stage	11.098
	SRR8316899	Complete white stage	39.354
	SRR8316903	Complete white stage	16.807
	SRR8316902	Silver flowering stage	13.091
	SRR8316904	Silver flowering stage	20.303
	SRR8316905	Silver flowering stage	9.531
	SRR8316906	Gold flowering stage	37.603
	SRR8316907	Gold flowering stage	29.398
	SRR8316908	Gold flowering stage	39.808
SRP132670	SRR6706286	Control	21.431
	SRR6706287	Light intensity 50%	23.663
	SRR6706288	Light intensity 20%	25.691
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.166
	CNS0095593	Slightly white alabastrum(diploid) 2	9.163
	CNS0095594	Slightly white alabastrum(diploid) 3	7.096
	CNS0095595	Whole white alabastrum(diploid) 2	8.803
	CNS0095596	Whole white alabastrum(diploid) 3	8.232
	CNS0095597	Whole white alabastrum(diploid) 4	5.802
	CNS0095598	Silvery flower (diploied) 1	15.888
	CNS0095599	Silvery flower (diploied) 2	9.867
	CNS0095600	Silvery flower (diploied) 3	26.813
	CNS0095601	Golden flower (diploid) 1	11.736
	CNS0095602	Golden flower (diploid) 2	25.131
	CNS0095603	Golden flower (diploid) 3	22.271
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.466
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.982
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.073
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.265
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.512
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.754
	CNS0095610	Silvery flower (tetraploid) 1	24.195
	CNS0095611	Silvery flower (tetraploid) 2	26.087
	CNS0095612	Silvery flower (tetraploid) 3	20.217
	CNS0095613	Golden flower (tetraploid) 1	10.160
	CNS0095614	Golden flower (tetraploid) 2	18.966
	CNS0095615	Golden flower (tetraploid) 3	21.862
CRA001975	CRR073297	Stem 1	28.603
	CRR073298	Stem 2	26.667
	CRR073299	Stem 3	29.094
	CRR073300	Leaf 1	36.824
	CRR073301	Leaf 2	32.537
	CRR073302	Leaf 3	32.828
	CRR073303	Juvenile bud 1	25.697
	CRR073304	Juvenile bud 2	24.487
	CRR073305	Juvenile bud 3	32.079
	CRR073306	Third green 1	12.619
	CRR073307	Third green 2	10.392
	CRR073308	Third green 3	12.442
	CRR073309	Second white 1	10.677
	CRR073310	Second white 2	12.730
	CRR073311	Second white 3	13.306
	CRR073312	Silver flowering 1	17.097
	CRR073313	Silver flowering 2	11.498
	CRR073314	Silver flowering 3	12.557
	CRR073315	Gold flowering 1	23.490
	CRR073316	Gold flowering 2	39.227
	CRR073317	Gold flowering 3	23.196
	CRR073318	Tawny withering 1	33.187
	CRR073319	Tawny withering 2	21.853
	CRR073320	Tawny withering 3	31.247