Gene detail

Detail information of GWHGAAZE006099

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276721.1	0	PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein [Vitis vinifera]
trEMBL	tr\|D7TW43\|D7TW43_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34718.3}
TAIR10	AT1G63110.1	4E-161	GPI transamidase subunit PIG-U

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	19307054	19314032	+
GWHAAZE00000002	mRNA	19307054	19314032	+
GWHAAZE00000002	exon	19307054	19307216	+
GWHAAZE00000002	exon	19307322	19307369	+
GWHAAZE00000002	exon	19307808	19307868	+
GWHAAZE00000002	exon	19307974	19308006	+
GWHAAZE00000002	exon	19309386	19309510	+
GWHAAZE00000002	exon	19309580	19309714	+
GWHAAZE00000002	exon	19311641	19311717	+
GWHAAZE00000002	exon	19311870	19312132	+
GWHAAZE00000002	exon	19312639	19312695	+
GWHAAZE00000002	exon	19312794	19312962	+
GWHAAZE00000002	exon	19313439	19313496	+
GWHAAZE00000002	exon	19313797	19313882	+
GWHAAZE00000002	exon	19313955	19314032	+
GWHAAZE00000002	CDS	19307054	19307216	+
GWHAAZE00000002	CDS	19307322	19307369	+
GWHAAZE00000002	CDS	19307808	19307868	+
GWHAAZE00000002	CDS	19307974	19308006	+
GWHAAZE00000002	CDS	19309386	19309510	+
GWHAAZE00000002	CDS	19309580	19309714	+
GWHAAZE00000002	CDS	19311641	19311717	+
GWHAAZE00000002	CDS	19311870	19312132	+
GWHAAZE00000002	CDS	19312639	19312695	+
GWHAAZE00000002	CDS	19312794	19312962	+
GWHAAZE00000002	CDS	19313439	19313496	+
GWHAAZE00000002	CDS	19313797	19313882	+
GWHAAZE00000002	CDS	19313955	19314032	+

Transcript Sequence
>GWHTAAZE006107 ATGGTAGCCCTAAAAATGGAAGGGACGATGAAGAAGAAGACAAGGTTTTGGAGGTGGGCCATAGCTTCAGTAATCTTCAGACTAATCCTCATCTACTTCCCTAAGAATCTCAACTTATCCTCTCGCCCCGAAGTCTCCACTCCTCTCACCAGCCTCCGCCGCTTGGCAGAAGGTTACTGGTTAAAGCAGTCATCAATGTCGCCCTATGCTGGTTCGATGTACCACGGATCTCCTCTTTTACTGTCAATTCTTGGTCCGCTCACTGTTAAGAGAATTGAAGGGCAACCTAACCAACTTTTATGCAGTTTGGTTTTTGTGATTGCAGATTTTATCACTGCATTGGTTATTCGTGCAACTGGCCAGAATCTCCAAAAAGCTTATACTCAAAGTTTTAAATCATTAGAACTTGCTAAACTTCTAGAGAATCCAGAAATTCTGTCATCTGGGGATATTGCTGCTCTCGTTTACTTGTGGAATCCTTTGACCATAGTCACCTGTGTGGGATCTTCCACATCCCCAATTGAAAATCTTTTCATCATCTTGACCCTTTATGGAGCTTGTACACGACGAGTTCCATTGGCAGCTTTTGGATGGGTCATAGCATCACATTTGTCTCTTTATCCCTTAATTCTTGTCATACCGGTAATTCTTTTATTAGGCTATGGTCCAGATGCACCCCCTAGGAAATTGTTCCTACAAAGGAATTTCTCAAAAAGTGGAGATAATTTCTCAACAACCACTACTAAGCAAAAGAAACAAAGAAGTCAATCAGCAGAGCCAACTTTGTTCTTATGGAGACCAGTTGCATTTTTCTTTTTCTGGGCATCTTTGTGGGCATGTAATGTCTTAGTTCTATGCGGCTTCTATGTGAAAGAATATGGTGGTCTTTGGGAGATTTTTAAGAGTACTTATGGGTTTATTCTCACTGTAGGAGATTTATCGCCAAACATAGGTGTCTTGTGGTACTTCTTTGCAGAAGTTTTTGATTTTTTCAGAAATTTCTTCCTGATAGTTTTCCACATAAATATTCTGTTCATGATATTGCCGTTGGCCATACGACTAAGCCACCGGCCGTATTTTCTGGCTTTTGTGTACATTGCTATCTCTTCAATACTAAAATCTTATCCTTCAGTTGGAGACTCAGCTCTGTATTTGGCGTTGTTGGGCTTGTTTATCAATGAACTAGCAGATATGCAGTTCTCTTTCTTCCTCTTTTGTGGATATGTGGGTGTTTCTCTTCTTAGCCCTGTGATGCACAATCTTTGGATATGGAGGGGCACTGGCAATGCAAATTTCTACTTTGCAACTGCTATGGCTTACGCTTGCTTCCAGGTTTGTGATTTTTTCAGTTGA

Network for GWHGAAZE006099

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06728.14	PIG-U	22	440	1.90E-111

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05293	PIGU	Metabolic pathways	map01100
K05293	PIGU	Glycosylphosphatidylinositol	map00563

Gene Ontology

GO term	Ontology	Name
GO:0016255	biological_process	attachment of GPI anchor to protein
GO:0016021	cellular_component	integral component of membrane
GO:0042765	cellular_component	GPI-anchor transamidase complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.816
	SRR3591706	second leaf	16.688
	SRR3591707	mature leaf	15.108
	SRR3591708	Shoot apex	23.463
	SRR3591709	Stem	24.766
	SRR3591710	White floral bud	22.313
	SRR3591711	White flower	24.386
	SRR3591712	Green floral bud	19.801
	SRR3591713	Yellow flower	19.328
SRP173429	SRR8316895	Juvenile bud stage	12.214
	SRR8316896	Juvenile bud stage	16.976
	SRR8316897	Juvenile bud stage	9.698
	SRR8316894	Third green stage	8.594
	SRR8316900	Third green stage	19.972
	SRR8316901	Third green stage	17.585
	SRR8316898	Complete white stage	7.900
	SRR8316899	Complete white stage	28.434
	SRR8316903	Complete white stage	14.895
	SRR8316902	Silver flowering stage	9.273
	SRR8316904	Silver flowering stage	12.006
	SRR8316905	Silver flowering stage	5.912
	SRR8316906	Gold flowering stage	21.996
	SRR8316907	Gold flowering stage	22.163
	SRR8316908	Gold flowering stage	20.867
SRP132670	SRR6706286	Control	9.117
	SRR6706287	Light intensity 50%	10.082
	SRR6706288	Light intensity 20%	11.932
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.669
	CNS0095593	Slightly white alabastrum(diploid) 2	11.042
	CNS0095594	Slightly white alabastrum(diploid) 3	11.992
	CNS0095595	Whole white alabastrum(diploid) 2	13.478
	CNS0095596	Whole white alabastrum(diploid) 3	12.685
	CNS0095597	Whole white alabastrum(diploid) 4	8.231
	CNS0095598	Silvery flower (diploied) 1	15.632
	CNS0095599	Silvery flower (diploied) 2	14.190
	CNS0095600	Silvery flower (diploied) 3	15.645
	CNS0095601	Golden flower (diploid) 1	11.709
	CNS0095602	Golden flower (diploid) 2	19.822
	CNS0095603	Golden flower (diploid) 3	16.705
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.250
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.394
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.175
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.122
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.342
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.066
	CNS0095610	Silvery flower (tetraploid) 1	14.240
	CNS0095611	Silvery flower (tetraploid) 2	13.291
	CNS0095612	Silvery flower (tetraploid) 3	12.216
	CNS0095613	Golden flower (tetraploid) 1	7.612
	CNS0095614	Golden flower (tetraploid) 2	13.294
	CNS0095615	Golden flower (tetraploid) 3	13.039
CRA001975	CRR073297	Stem 1	8.817
	CRR073298	Stem 2	9.880
	CRR073299	Stem 3	5.656
	CRR073300	Leaf 1	9.818
	CRR073301	Leaf 2	8.012
	CRR073302	Leaf 3	5.490
	CRR073303	Juvenile bud 1	6.240
	CRR073304	Juvenile bud 2	5.481
	CRR073305	Juvenile bud 3	6.300
	CRR073306	Third green 1	3.287
	CRR073307	Third green 2	3.474
	CRR073308	Third green 3	3.944
	CRR073309	Second white 1	3.957
	CRR073310	Second white 2	3.265
	CRR073311	Second white 3	3.614
	CRR073312	Silver flowering 1	4.070
	CRR073313	Silver flowering 2	3.996
	CRR073314	Silver flowering 3	4.409
	CRR073315	Gold flowering 1	2.834
	CRR073316	Gold flowering 2	3.413
	CRR073317	Gold flowering 3	2.576
	CRR073318	Tawny withering 1	6.990
	CRR073319	Tawny withering 2	8.189
	CRR073320	Tawny withering 3	9.559