Gene detail

Detail information of GWHGAAZE006105

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010278589.1	3.0491E-178	PREDICTED: E3 ubiquitin-protein ligase At1g12760 isoform X2 [Nelumbo nucifera]
Swissprot	tr\|Q9LN71\|RING1_ARATH	2E-156	E3 ubiquitin-protein ligase At1g12760
trEMBL	tr\|A0A072UPE3\|A0A072UPE3_MEDTR	3E-174	Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313\|EMBL:KEH31714.1}
TAIR10	AT1G63170.1	2E-98	Zinc finger, C3HC4 type (RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	19406507	19412544	+
GWHAAZE00000002	mRNA	19406507	19412544	+
GWHAAZE00000002	exon	19406507	19406982	+
GWHAAZE00000002	exon	19407589	19407711	+
GWHAAZE00000002	exon	19408513	19408645	+
GWHAAZE00000002	exon	19411701	19411868	+
GWHAAZE00000002	exon	19412206	19412544	+
GWHAAZE00000002	CDS	19406507	19406982	+
GWHAAZE00000002	CDS	19407589	19407711	+
GWHAAZE00000002	CDS	19408513	19408645	+
GWHAAZE00000002	CDS	19411701	19411868	+
GWHAAZE00000002	CDS	19412206	19412382	+
GWHAAZE00000002	three_prime_UTR	19412383	19412544	+

Transcript Sequence
>GWHTAAZE006113 ATGTCCACTTCAACCTCACCCACCACCACCCCGTTATTGGACCCCGGCGAGGACTCAGATCGGAGCCGCCGCTCTCTCCGCCGACAGAGCCTACGTGAAGCTGCACGGTTCGTCCGTCGAGCCAGCAGCCGCCGTCTGATGAGGGAGCCATCGATGCTCGTCAGGGAATCGGCTGCCGAACAGCTCGAGAACCAACAGAGCGATTGGGCGTATTCGAAGCCTGTTGTAATCATGGATATCGTCTGGAACTTAGCGTTCGTGTTGGTCGCAGTCGTCGTGCTGTTTATGAGCTGGGACGAGTCTCCCAATCTGCACCTGAGGCTCTGGATTCTGGGCTATGCTTTGCAGTGTTTACTGCATATTGGTTGTGTTTGTGTGGAGTATAGGCGTCGGCGGTGGAGGTGGAGGGCCACGAGGCGAGAGGGGAGTGGAAGTGGTGAGGGTTTGGGGAGTGGCGAGGGAGGGGAGGGGCTTCGTACTGTAGCAAAGCATTTGGAATCTGCAAATACGATGTTCTCTTTCATTTGGTGGATCATTGGATTTTATTGGGTTTCTGCCGGCGGACAAAGATTGGCAGAGGACTCCCCTCAGATCTACTGGCTTTGTATAGCTTTCCTGGCATTTGATGTCTTCTTTGTTGTTTTCTGTGTTGCACTGGCATGTGTTATTGGCATTGCGGTTTGCTGTTGTCTTCCATGTATTATTGCAGTCTTATATGCTGTGGCGGACCAGGAAGGAGCAACCAAAGAAGACATTGAAAAACTGCTGAAATACAAATTTCGACGAGTCAATAATAGTACGGAGAAACTTAATGGTGAGATAGAAGGAACTTGTGGGGGATTGATGACGGAATGTGACACAGACAACCCGATTGAACATGTTCTTTCACCTGAAGATGCGGAGTGTTGCATATGCATATCTGCTTATGATGATGGGGCAGAGCTTCGAGAACTGCCATGCGGTCACCATTTCCATTGCAGCTGTGTAGACAAGTGGCTTCACATACATTCTACCTGCCCCCTCTGTAAGTACAACATCTTGAAGAGTACTGACCATGGCAATGAGGAGGAGGTATAGCAAGTTGTAAGACAAGTATGTGTACTTTTATAGCTAGCCCGAGACTTTCACTCCCGTGCAAGCTCTGTTTTGCGTTCTGTTGTATGAATTACTGGTTGGTTGTTATGCACGTGCTTTAGCTTTATTAGGCGATTGTGTATATAAACTACAATAATACTACAT

Network for GWHGAAZE006105

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	301	343	2.30E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	61.652
	SRR3591706	second leaf	35.801
	SRR3591707	mature leaf	41.425
	SRR3591708	Shoot apex	59.359
	SRR3591709	Stem	89.342
	SRR3591710	White floral bud	57.660
	SRR3591711	White flower	68.910
	SRR3591712	Green floral bud	39.741
	SRR3591713	Yellow flower	61.400
SRP173429	SRR8316895	Juvenile bud stage	27.502
	SRR8316896	Juvenile bud stage	38.484
	SRR8316897	Juvenile bud stage	17.698
	SRR8316894	Third green stage	13.402
	SRR8316900	Third green stage	34.564
	SRR8316901	Third green stage	34.658
	SRR8316898	Complete white stage	27.090
	SRR8316899	Complete white stage	65.384
	SRR8316903	Complete white stage	41.679
	SRR8316902	Silver flowering stage	32.561
	SRR8316904	Silver flowering stage	36.924
	SRR8316905	Silver flowering stage	18.928
	SRR8316906	Gold flowering stage	80.576
	SRR8316907	Gold flowering stage	63.449
	SRR8316908	Gold flowering stage	78.518
SRP132670	SRR6706286	Control	44.794
	SRR6706287	Light intensity 50%	38.155
	SRR6706288	Light intensity 20%	39.436
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.278
	CNS0095593	Slightly white alabastrum(diploid) 2	44.984
	CNS0095594	Slightly white alabastrum(diploid) 3	49.469
	CNS0095595	Whole white alabastrum(diploid) 2	36.556
	CNS0095596	Whole white alabastrum(diploid) 3	31.848
	CNS0095597	Whole white alabastrum(diploid) 4	36.535
	CNS0095598	Silvery flower (diploied) 1	78.755
	CNS0095599	Silvery flower (diploied) 2	76.785
	CNS0095600	Silvery flower (diploied) 3	73.052
	CNS0095601	Golden flower (diploid) 1	91.999
	CNS0095602	Golden flower (diploid) 2	85.143
	CNS0095603	Golden flower (diploid) 3	81.780
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.425
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.876
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.434
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.765
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.793
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.401
	CNS0095610	Silvery flower (tetraploid) 1	89.740
	CNS0095611	Silvery flower (tetraploid) 2	82.466
	CNS0095612	Silvery flower (tetraploid) 3	75.334
	CNS0095613	Golden flower (tetraploid) 1	73.429
	CNS0095614	Golden flower (tetraploid) 2	87.563
	CNS0095615	Golden flower (tetraploid) 3	87.405
CRA001975	CRR073297	Stem 1	49.652
	CRR073298	Stem 2	44.991
	CRR073299	Stem 3	53.964
	CRR073300	Leaf 1	39.343
	CRR073301	Leaf 2	39.072
	CRR073302	Leaf 3	45.256
	CRR073303	Juvenile bud 1	52.400
	CRR073304	Juvenile bud 2	40.629
	CRR073305	Juvenile bud 3	58.451
	CRR073306	Third green 1	41.336
	CRR073307	Third green 2	46.773
	CRR073308	Third green 3	40.678
	CRR073309	Second white 1	61.876
	CRR073310	Second white 2	48.302
	CRR073311	Second white 3	39.688
	CRR073312	Silver flowering 1	56.529
	CRR073313	Silver flowering 2	79.141
	CRR073314	Silver flowering 3	60.607
	CRR073315	Gold flowering 1	45.898
	CRR073316	Gold flowering 2	51.255
	CRR073317	Gold flowering 3	45.870
	CRR073318	Tawny withering 1	66.231
	CRR073319	Tawny withering 2	60.830
	CRR073320	Tawny withering 3	58.388