Gene detail

Detail information of GWHGAAZE006107

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006440567.1	1.7266E-118	hypothetical protein CICLE_v10021287mg [Citrus clementina]
Swissprot	tr\|Q9T0D3\|HFB2B_ARATH	2E-84	Heat stress transcription factor B-2b
trEMBL	tr\|V4TK86\|V4TK86_9ROSI	6E-119	Uncharacterized protein {ECO:0000313\|EMBL:ESR53807.1}
TAIR10	AT4G11660.1	1E-56	winged-helix DNA-binding transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	19438076	19439065	-
GWHAAZE00000002	mRNA	19438076	19439065	-
GWHAAZE00000002	exon	19438814	19439065	-
GWHAAZE00000002	exon	19438309	19438702	-
GWHAAZE00000002	exon	19438076	19438239	-
GWHAAZE00000002	CDS	19438814	19439065	-
GWHAAZE00000002	CDS	19438309	19438702	-
GWHAAZE00000002	CDS	19438076	19438239	-

Transcript Sequence
>GWHTAAZE006115 ATGCCCCCGTCGCCGGTTGAACAGGGAGGCGAAACAACAACAACCGGAGAGTTGCAGAGATCTCTGCCGACGCCCTTTTTAACCAAGACCTACCAACTCGTCGACGATCCTTCGTTCGATGATCTGATTTCCTGGAATGAAGACGGTACCACCTTCATCGTTTGGCGACCAGCTGAATTTGCTAGAGATCTGCTTCCCAAATACTTTAAACACAACAACTTTTCAAGTTTTGTTCGCCAGCTAAATACTTACGGATTTAGAAAAGTAGTTCCTGATCGATGGGAGTTTGCAAATGACTGTTTCCGAAGAGGCGAGAAAGGCCTCCTCCGGGAGATTCAACGGCGGAAACTCTCGCCTGCACCTGCTCCGGTAGCAACAACCGCCGCCGCTGCGACCGCTCAGGCGGTTACGACTGCTCTTGTGTCGGTGTCTCCCGGAAATTCCGGTGACGAGCAAGTCGTGTCATCGAACTCATCACCCGTGCCTATGACTAATGCTACGGTGCTTCGCGGCACAACCTGTGCCAATACGCCCGAGCTTCTAGAAGAGAACGAACGGCTCCGAAAGAATAACGCTCAATTGAACCAAGAGCTGAATCGGTTGAGGAATCTGTGCAATAGTATATTTAATTTAATGACGAATTACGATAGTGGAGGTGCAGCCGATGGAGGATCTAAGTGCGATGACGCGGTGAGTCCGCGGTTGTTCGGTGTATCGATCGGCACTAAGCGCGTGAGGACGACGTGTGAGGAGGATCGTGTACAGCGGCAGGGTTCTGATATGAAATCAGAGCCGTCGGCTAATAGATAG

Network for GWHGAAZE006107

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00447.18	HSF_DNA-bind	26	115	9.40E-33

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	71.979
	SRR3591706	second leaf	7.828
	SRR3591707	mature leaf	27.827
	SRR3591708	Shoot apex	61.117
	SRR3591709	Stem	53.956
	SRR3591710	White floral bud	20.085
	SRR3591711	White flower	24.257
	SRR3591712	Green floral bud	10.033
	SRR3591713	Yellow flower	19.373
SRP173429	SRR8316895	Juvenile bud stage	97.769
	SRR8316896	Juvenile bud stage	176.750
	SRR8316897	Juvenile bud stage	75.156
	SRR8316894	Third green stage	18.122
	SRR8316900	Third green stage	36.134
	SRR8316901	Third green stage	69.252
	SRR8316898	Complete white stage	13.122
	SRR8316899	Complete white stage	97.536
	SRR8316903	Complete white stage	20.192
	SRR8316902	Silver flowering stage	26.745
	SRR8316904	Silver flowering stage	28.691
	SRR8316905	Silver flowering stage	22.402
	SRR8316906	Gold flowering stage	98.289
	SRR8316907	Gold flowering stage	86.912
	SRR8316908	Gold flowering stage	56.785
SRP132670	SRR6706286	Control	39.203
	SRR6706287	Light intensity 50%	28.556
	SRR6706288	Light intensity 20%	22.713
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.306
	CNS0095593	Slightly white alabastrum(diploid) 2	37.978
	CNS0095594	Slightly white alabastrum(diploid) 3	34.009
	CNS0095595	Whole white alabastrum(diploid) 2	22.196
	CNS0095596	Whole white alabastrum(diploid) 3	6.356
	CNS0095597	Whole white alabastrum(diploid) 4	14.017
	CNS0095598	Silvery flower (diploied) 1	57.707
	CNS0095599	Silvery flower (diploied) 2	125.449
	CNS0095600	Silvery flower (diploied) 3	138.684
	CNS0095601	Golden flower (diploid) 1	182.258
	CNS0095602	Golden flower (diploid) 2	174.677
	CNS0095603	Golden flower (diploid) 3	176.410
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.293
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.211
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.592
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.032
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.735
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.290
	CNS0095610	Silvery flower (tetraploid) 1	35.112
	CNS0095611	Silvery flower (tetraploid) 2	61.204
	CNS0095612	Silvery flower (tetraploid) 3	15.238
	CNS0095613	Golden flower (tetraploid) 1	32.974
	CNS0095614	Golden flower (tetraploid) 2	36.298
	CNS0095615	Golden flower (tetraploid) 3	13.564
CRA001975	CRR073297	Stem 1	25.284
	CRR073298	Stem 2	28.852
	CRR073299	Stem 3	33.284
	CRR073300	Leaf 1	37.767
	CRR073301	Leaf 2	57.281
	CRR073302	Leaf 3	25.962
	CRR073303	Juvenile bud 1	32.178
	CRR073304	Juvenile bud 2	15.435
	CRR073305	Juvenile bud 3	44.873
	CRR073306	Third green 1	19.436
	CRR073307	Third green 2	16.322
	CRR073308	Third green 3	11.254
	CRR073309	Second white 1	11.921
	CRR073310	Second white 2	23.305
	CRR073311	Second white 3	13.987
	CRR073312	Silver flowering 1	23.430
	CRR073313	Silver flowering 2	16.089
	CRR073314	Silver flowering 3	18.819
	CRR073315	Gold flowering 1	11.811
	CRR073316	Gold flowering 2	14.710
	CRR073317	Gold flowering 3	14.030
	CRR073318	Tawny withering 1	55.603
	CRR073319	Tawny withering 2	85.202
	CRR073320	Tawny withering 3	75.052