Detail information of GWHGAAZE006110


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011033779.10PREDICTED: bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Populus euphratica]
Swissprottr|B0M3E8|UGE1_PEA0Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1
trEMBLtr|A0A061G683|A0A061G683_THECC0UDP-D-glucose/UDP-D-galactose 4-epimerase 1 isoform 1 {ECO:0000313|EMBL:EOY24657.1}
TAIR10AT1G12780.17E-171UDP-D-glucose/UDP-D-galactose 4-epimerase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1946059619466114-
GWHAAZE00000002mRNA1946059619466114-
GWHAAZE00000002exon1946572419466114-
GWHAAZE00000002exon1946517319465222-
GWHAAZE00000002exon1946482119464956-
GWHAAZE00000002exon1946393619464037-
GWHAAZE00000002exon1946352719463754-
GWHAAZE00000002exon1946330119463442-
GWHAAZE00000002exon1946161019461692-
GWHAAZE00000002exon1946138719461478-
GWHAAZE00000002exon1946059619460926-
GWHAAZE00000002five_prime_UTR1946591919466114-
GWHAAZE00000002CDS1946572419465918-
GWHAAZE00000002CDS1946517319465222-
GWHAAZE00000002CDS1946482119464956-
GWHAAZE00000002CDS1946393619464037-
GWHAAZE00000002CDS1946352719463754-
GWHAAZE00000002CDS1946330119463442-
GWHAAZE00000002CDS1946161019461692-
GWHAAZE00000002CDS1946138719461478-
GWHAAZE00000002CDS1946084219460926-
GWHAAZE00000002three_prime_UTR1946059619460841-
Transcript Sequence

Network for GWHGAAZE006110

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16363.6GDP_Man_Dehyd93542.10E-62
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01784galE, GALE Metabolic pathways map01100
Galactose metabolismmap00052
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName
GO:0006012biological_processgalactose metabolic process
GO:0003978molecular_functionUDP-glucose 4-epimerase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf63.102
SRR3591706second leaf40.906
SRR3591707mature leaf33.616
SRR3591708Shoot apex35.467
SRR3591709Stem55.413
SRR3591710White floral bud462.323
SRR3591711White flower272.356
SRR3591712Green floral bud188.646
SRR3591713Yellow flower417.704
SRP173429 SRR8316895Juvenile bud stage 46.954
SRR8316896Juvenile bud stage 77.115
SRR8316897Juvenile bud stage 46.131
SRR8316894Third green stage 57.869
SRR8316900Third green stage 312.939
SRR8316901Third green stage 276.227
SRR8316898Complete white stage 378.037
SRR8316899Complete white stage 471.048
SRR8316903Complete white stage 513.438
SRR8316902Silver flowering stage256.709
SRR8316904Silver flowering stage383.247
SRR8316905Silver flowering stage183.553
SRR8316906Gold flowering stage 411.707
SRR8316907Gold flowering stage 375.823
SRR8316908Gold flowering stage 354.431
SRP132670SRR6706286Control302.914
SRR6706287Light intensity 50%326.381
SRR6706288Light intensity 20%360.804
CNP0000432CNS0095592Slightly white alabastrum(diploid) 186.524
CNS0095593Slightly white alabastrum(diploid) 2103.596
CNS0095594Slightly white alabastrum(diploid) 381.360
CNS0095595Whole white alabastrum(diploid) 2103.796
CNS0095596Whole white alabastrum(diploid) 3112.037
CNS0095597Whole white alabastrum(diploid) 4123.420
CNS0095598Silvery flower (diploied) 1267.028
CNS0095599Silvery flower (diploied) 2317.306
CNS0095600Silvery flower (diploied) 3760.537
CNS0095601Golden flower (diploid) 1345.513
CNS0095602Golden flower (diploid) 2727.242
CNS0095603Golden flower (diploid) 3702.468
CNS0095604Slightly white alabastrum(tetraploid) 1126.861
CNS0095605Slightly white alabastrum(tetraploid) 2112.472
CNS0095606Slightly white alabastrum(tetraploid) 3218.704
CNS0095607Whole white alabastrum(tetraploid) 186.396
CNS0095608Whole white alabastrum(tetraploid) 2107.009
CNS0095609Whole white alabastrum(tetraploid) 3306.142
CNS0095610Silvery flower (tetraploid) 1754.010
CNS0095611Silvery flower (tetraploid) 2867.188
CNS0095612Silvery flower (tetraploid) 3690.591
CNS0095613Golden flower (tetraploid) 1793.241
CNS0095614Golden flower (tetraploid) 2802.015
CNS0095615Golden flower (tetraploid) 31848.206
CRA001975CRR073297Stem 190.651
CRR073298Stem 298.220
CRR073299Stem 370.625
CRR073300Leaf 1281.045
CRR073301Leaf 2234.962
CRR073302Leaf 3271.901
CRR073303Juvenile bud 1414.344
CRR073304Juvenile bud 2501.777
CRR073305Juvenile bud 3362.987
CRR073306Third green 1464.258
CRR073307Third green 2426.186
CRR073308Third green 3364.942
CRR073309Second white 1288.989
CRR073310Second white 2200.103
CRR073311Second white 3116.837
CRR073312Silver flowering 176.663
CRR073313Silver flowering 277.170
CRR073314Silver flowering 379.795
CRR073315Gold flowering 133.563
CRR073316Gold flowering 229.491
CRR073317Gold flowering 324.147
CRR073318Tawny withering 153.163
CRR073319Tawny withering 260.886
CRR073320Tawny withering 346.927