Gene detail

Detail information of GWHGAAZE006112

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002282807.1	PREDICTED: lysophospholipid acyltransferase 1 [Vitis vinifera]
Swissprot	tr\|F4IDU4\|MBOA1_ARATH	Lysophospholipid acyltransferase 1
trEMBL	tr\|F6HUH5\|F6HUH5_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58398.1}
TAIR10	AT1G12640.1	MBOAT (membrane bound O-acyl transferase) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	19525130	19529973	+
GWHAAZE00000002	mRNA	19525130	19529973	+
GWHAAZE00000002	exon	19525130	19525428	+
GWHAAZE00000002	exon	19527147	19527202	+
GWHAAZE00000002	exon	19527532	19527752	+
GWHAAZE00000002	exon	19527839	19528247	+
GWHAAZE00000002	exon	19528648	19528733	+
GWHAAZE00000002	exon	19529028	19529091	+
GWHAAZE00000002	exon	19529190	19529308	+
GWHAAZE00000002	exon	19529827	19529973	+
GWHAAZE00000002	CDS	19525130	19525428	+
GWHAAZE00000002	CDS	19527147	19527202	+
GWHAAZE00000002	CDS	19527532	19527752	+
GWHAAZE00000002	CDS	19527839	19528247	+
GWHAAZE00000002	CDS	19528648	19528733	+
GWHAAZE00000002	CDS	19529028	19529091	+
GWHAAZE00000002	CDS	19529190	19529308	+
GWHAAZE00000002	CDS	19529827	19529973	+

Transcript Sequence
>GWHTAAZE006120 ATGGAGGTGGAGGCAATGGCGTCGGCGATCGGGGTGTCTGTCCCAGTCCTCCGATTCCTCCTCTGTTTCGCTGCCACCATTCCGGCTAGTTTCCTCTGGCGCCTCGTTCCTGGCGGACCACAGGCCAATCACGTTTACGCCGCCGCCTCAGGTGCTGTCCTTTCCTACCTTTCTTTTGGATTCACCTCCAATCTCCATTTCCTCGTCCCAATATTGATCAGCTACGCCTGCATGATCCTTTACCGCCGGCGATGCGGCATTATCACGTTTGTCTTGGCCCTCGGGTACCTCATTGGCTGCCATGTTTACTACATGAGTGGGGATGCATGGAAAGAAGGGGGGATCGACGCAACTGGAGCTCTAATGGTGCTAACACTCAAAGTCATTTCGTGCGCGATTAATTACAATGATGGATTACTAAAAGAGGAAAATCTACGCGAGGTACAAAAGAAAAATCGGTTGCTTAAGTTACCCTCGTTAGTTGAGTACTTTGGTTACTGCCTATGTTGTGGAAGTCACTTTGCTGGTCCAGTTTATGAAATGAAGGATTATCTTGAATGGAGTGAAAGGAAGGGGATTTGGATGCGTTCAGAGAAGGGGAAATTACCATCACCTTTTGGGGCAATAGCTAGAGCTCTCCTCCAAGCCGCTTTCTGTATGGGCCTGTATATGAACCTTGTACCGCATTTTCCACTTTCTCGATTTACTGATCCCGTTTACCAAGAATGGGGATTTTGGAAACGGTTGGGTTACCAGTACATGATTGGCTTCACTGCCCGTTGGAAATATTATTTCATATGGTCAATCTCGGAAGCTTCACTAATTGTTTCTGGTCTGGGTTTTACTGGGTGGACTGATTCTTCTACACCCAAGCCTAGGTGGGACCGTGCAAAAAATGTTGACATATTGGGTGTTGAACTAGCAAAGAGTTCGGTTGAGCTACCACTTAAGTGGAACATTCAAGTCAGCACCTGGCTACGTCATTACATTTATGAGAGGCTCATTCAGAAGGGAAAGAAACCTGGTTTCTTTCAGTTGTTGGCTACACAAACCGTCAGTGCTGTCTGGCATGGATTATATCCTGGGTACATCATATTCTTTGTTCAATCAGCTTTGATGATTGCTGGTTCAAGAGTCCTTTACAGATGGCAGCAAGCCACTCCTCCGAATTTGGCTTGGTTTAGGAAGATGTTAGTGTTCACGAATTTGACTTACACAGTTCTTGTTCTTAACTGCTCTTGCGTTGGTTTCATGGTATTAAGTCTTCATGAAACAATTACCGCATACAGGAGTGTATATTACATTGGAACTATTGTTCCCATGGTAATTATCCTCCTTGGCTACATAATTAAGCCAGCACCAGCACGGCCTGTCAGACCCAAAGCCCAAAAGGAACAATGA

Network for GWHGAAZE006112

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03062.20	MBOAT	103	415	6.10E-65

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13519	LPT1, ALE1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerolipid metabolism	map00561
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.531
	SRR3591706	second leaf	0.339
	SRR3591707	mature leaf	0.946
	SRR3591708	Shoot apex	3.340
	SRR3591709	Stem	0.564
	SRR3591710	White floral bud	14.891
	SRR3591711	White flower	1.955
	SRR3591712	Green floral bud	18.044
	SRR3591713	Yellow flower	0.314
SRP173429	SRR8316895	Juvenile bud stage	5.841
	SRR8316896	Juvenile bud stage	15.124
	SRR8316897	Juvenile bud stage	5.391
	SRR8316894	Third green stage	5.510
	SRR8316900	Third green stage	19.054
	SRR8316901	Third green stage	19.283
	SRR8316898	Complete white stage	0.952
	SRR8316899	Complete white stage	3.235
	SRR8316903	Complete white stage	1.419
	SRR8316902	Silver flowering stage	0.329
	SRR8316904	Silver flowering stage	1.105
	SRR8316905	Silver flowering stage	0.452
	SRR8316906	Gold flowering stage	0.538
	SRR8316907	Gold flowering stage	0.146
	SRR8316908	Gold flowering stage	0.102
SRP132670	SRR6706286	Control	11.561
	SRR6706287	Light intensity 50%	12.667
	SRR6706288	Light intensity 20%	12.011
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.591
	CNS0095593	Slightly white alabastrum(diploid) 2	13.313
	CNS0095594	Slightly white alabastrum(diploid) 3	23.732
	CNS0095595	Whole white alabastrum(diploid) 2	32.467
	CNS0095596	Whole white alabastrum(diploid) 3	41.779
	CNS0095597	Whole white alabastrum(diploid) 4	40.844
	CNS0095598	Silvery flower (diploied) 1	4.847
	CNS0095599	Silvery flower (diploied) 2	7.049
	CNS0095600	Silvery flower (diploied) 3	2.320
	CNS0095601	Golden flower (diploid) 1	5.321
	CNS0095602	Golden flower (diploid) 2	3.838
	CNS0095603	Golden flower (diploid) 3	2.123
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.815
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.658
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.797
	CNS0095607	Whole white alabastrum(tetraploid) 1	43.643
	CNS0095608	Whole white alabastrum(tetraploid) 2	46.901
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.499
	CNS0095610	Silvery flower (tetraploid) 1	0.852
	CNS0095611	Silvery flower (tetraploid) 2	1.686
	CNS0095612	Silvery flower (tetraploid) 3	4.362
	CNS0095613	Golden flower (tetraploid) 1	0.688
	CNS0095614	Golden flower (tetraploid) 2	0.511
	CNS0095615	Golden flower (tetraploid) 3	2.033
CRA001975	CRR073297	Stem 1	7.776
	CRR073298	Stem 2	9.030
	CRR073299	Stem 3	6.668
	CRR073300	Leaf 1	18.844
	CRR073301	Leaf 2	14.391
	CRR073302	Leaf 3	11.566
	CRR073303	Juvenile bud 1	16.838
	CRR073304	Juvenile bud 2	10.022
	CRR073305	Juvenile bud 3	5.957
	CRR073306	Third green 1	5.355
	CRR073307	Third green 2	7.059
	CRR073308	Third green 3	6.886
	CRR073309	Second white 1	0.447
	CRR073310	Second white 2	1.089
	CRR073311	Second white 3	1.257
	CRR073312	Silver flowering 1	5.372
	CRR073313	Silver flowering 2	5.540
	CRR073314	Silver flowering 3	2.390
	CRR073315	Gold flowering 1	5.635
	CRR073316	Gold flowering 2	3.085
	CRR073317	Gold flowering 3	4.471
	CRR073318	Tawny withering 1	4.529
	CRR073319	Tawny withering 2	5.115
	CRR073320	Tawny withering 3	4.563