Gene detail

Detail information of GWHGAAZE006118

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010245871.1	0	PREDICTED: angio-associated migratory cell protein [Nelumbo nucifera]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	5E-33	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|A0A0A0KBX7\|A0A0A0KBX7_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN45882.1}
TAIR10	AT1G71840.1	8E-150	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	19607087	19611748	+
GWHAAZE00000002	mRNA	19607087	19611748	+
GWHAAZE00000002	exon	19607087	19607180	+
GWHAAZE00000002	exon	19607293	19607340	+
GWHAAZE00000002	exon	19607455	19607496	+
GWHAAZE00000002	exon	19607975	19608094	+
GWHAAZE00000002	exon	19608565	19608690	+
GWHAAZE00000002	exon	19609010	19609186	+
GWHAAZE00000002	exon	19609277	19609360	+
GWHAAZE00000002	exon	19609845	19609960	+
GWHAAZE00000002	exon	19610604	19610662	+
GWHAAZE00000002	exon	19610726	19610816	+
GWHAAZE00000002	exon	19611521	19611748	+
GWHAAZE00000002	CDS	19607087	19607180	+
GWHAAZE00000002	CDS	19607293	19607340	+
GWHAAZE00000002	CDS	19607455	19607496	+
GWHAAZE00000002	CDS	19607975	19608094	+
GWHAAZE00000002	CDS	19608565	19608690	+
GWHAAZE00000002	CDS	19609010	19609186	+
GWHAAZE00000002	CDS	19609277	19609360	+
GWHAAZE00000002	CDS	19609845	19609960	+
GWHAAZE00000002	CDS	19610604	19610662	+
GWHAAZE00000002	CDS	19610726	19610816	+
GWHAAZE00000002	CDS	19611521	19611748	+

Transcript Sequence
>GWHTAAZE006126 ATGGACGCTCCTACTAATGATGAAGAAGAAGATCAGGTTGAGGTTTTTCTTGATGAAAATGACATCGTACAGGAAATTGCCTTTGATGATGAAGATCTTCCCGACGCTGACGGAGAAGCAAGTTCTGATGACGAAGCTGTTGATGAAGCCGATGATTCAATGCACATATTCACTGGTCATACTGGTGAACTTTACACAGTTGCATGCAGCCCAACGGATACTACATTAGTGGCAACGGGGGGTGGGGATGATAAAGGATTTCTTTGGAAGATTGGTCGAGGAGATTGGGCTTTTGAGTTACAAGGTCATAAGGATTCTGTTTCTAGTTTAGCCTTCAGTACAGATGGACAGTTGCTTGCATCTGGAAGTTTCGATGGACTTATTCAGGTGTGGGACATATCTTCAGGAAATCTCAAGTGCACGCTTGAAGATTTGAGTATGAGTTATGAGACCACTCAGTGGGTCAGGTGGCACCCAAGAGGACATTTGGTGTTGGCTGGTTTGGAAGATTCAACTGTTTGGTTGTGGAATGCTGACAAGAGTGCCTACCTTAATATGTTTTCAGGTCATGCCAGTAGCGTGACCTGTGGGGATTTTACTCCTGATGGTAAAACAATCTGTACTGGTTCTGATGATGCAACTCTGAGGATATGGAACCCTAAAACTGGTCAAAACATCCATGTTGTTAGTGGTTATCCATATCATCGTGAAGGGCTGACTTGCTTGACAATAAGTTCTGATTCAACTCTTGCTCTTACTGGTTCAAAGGATAGTTTTGTTCACATTGTGAATATAACAACCGGGAAGGTGGTTAGTTCTTTGAGTGCTCACACAGATTCCATTGAGTGTATAACCCTTGCACCAAGCTCTCCTTGGGCCGCAACTGGAAGCATGGATAAAAAACTCATCGTCTGGGATCTCCAACACTCATTGCCCCGCTGCACATGCGAACACGAGGATGGGGTGGCATGCTTGACATGGCTAGGTGCATCTAAGTACCTGGCAACGGGCTGTGTTGACGGAAAAATAAGGGTATGGGATAGTCTTTCTGGAGATTGTGTGAGAACCCTTAGTGGGCATTCTGATGCTGTCCAGTCTCTGGCCGTATCTGCAAATGCCGACTTTCTTGTTTCAGTCTCAATTGATGGAACTGCTCGAGTATTTGAAATCGCTGAATTCAAGTAA

Network for GWHGAAZE006118

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	53	85	0.18
PF00400.33	WD40	99	132	1.40E-07
PF00400.33	WD40	185	219	6.80E-08
PF00400.33	WD40	223	262	0.12
PF00400.33	WD40	269	306	1.30E-06
PF00400.33	WD40	317	347	6.10E-05
PF00400.33	WD40	351	388	6.80E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.900
	SRR3591706	second leaf	19.273
	SRR3591707	mature leaf	17.095
	SRR3591708	Shoot apex	29.287
	SRR3591709	Stem	24.886
	SRR3591710	White floral bud	21.157
	SRR3591711	White flower	25.855
	SRR3591712	Green floral bud	24.392
	SRR3591713	Yellow flower	23.483
SRP173429	SRR8316895	Juvenile bud stage	11.591
	SRR8316896	Juvenile bud stage	17.275
	SRR8316897	Juvenile bud stage	12.261
	SRR8316894	Third green stage	8.303
	SRR8316900	Third green stage	20.914
	SRR8316901	Third green stage	21.742
	SRR8316898	Complete white stage	8.777
	SRR8316899	Complete white stage	29.226
	SRR8316903	Complete white stage	13.465
	SRR8316902	Silver flowering stage	10.352
	SRR8316904	Silver flowering stage	11.677
	SRR8316905	Silver flowering stage	5.652
	SRR8316906	Gold flowering stage	19.701
	SRR8316907	Gold flowering stage	19.400
	SRR8316908	Gold flowering stage	22.262
SRP132670	SRR6706286	Control	20.993
	SRR6706287	Light intensity 50%	23.244
	SRR6706288	Light intensity 20%	24.166
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.234
	CNS0095593	Slightly white alabastrum(diploid) 2	15.011
	CNS0095594	Slightly white alabastrum(diploid) 3	8.485
	CNS0095595	Whole white alabastrum(diploid) 2	10.211
	CNS0095596	Whole white alabastrum(diploid) 3	12.134
	CNS0095597	Whole white alabastrum(diploid) 4	9.326
	CNS0095598	Silvery flower (diploied) 1	11.940
	CNS0095599	Silvery flower (diploied) 2	12.587
	CNS0095600	Silvery flower (diploied) 3	15.108
	CNS0095601	Golden flower (diploid) 1	12.035
	CNS0095602	Golden flower (diploid) 2	16.014
	CNS0095603	Golden flower (diploid) 3	12.035
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.973
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.884
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.571
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.272
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.392
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.183
	CNS0095610	Silvery flower (tetraploid) 1	15.637
	CNS0095611	Silvery flower (tetraploid) 2	12.115
	CNS0095612	Silvery flower (tetraploid) 3	9.910
	CNS0095613	Golden flower (tetraploid) 1	7.536
	CNS0095614	Golden flower (tetraploid) 2	10.151
	CNS0095615	Golden flower (tetraploid) 3	9.656
CRA001975	CRR073297	Stem 1	21.421
	CRR073298	Stem 2	21.306
	CRR073299	Stem 3	20.078
	CRR073300	Leaf 1	24.304
	CRR073301	Leaf 2	22.220
	CRR073302	Leaf 3	22.519
	CRR073303	Juvenile bud 1	18.946
	CRR073304	Juvenile bud 2	15.933
	CRR073305	Juvenile bud 3	17.361
	CRR073306	Third green 1	5.308
	CRR073307	Third green 2	8.179
	CRR073308	Third green 3	7.468
	CRR073309	Second white 1	8.708
	CRR073310	Second white 2	9.928
	CRR073311	Second white 3	10.013
	CRR073312	Silver flowering 1	8.388
	CRR073313	Silver flowering 2	4.657
	CRR073314	Silver flowering 3	5.728
	CRR073315	Gold flowering 1	13.234
	CRR073316	Gold flowering 2	20.944
	CRR073317	Gold flowering 3	11.869
	CRR073318	Tawny withering 1	16.210
	CRR073319	Tawny withering 2	21.136
	CRR073320	Tawny withering 3	22.375