Gene detail

Detail information of GWHGAAZE006123

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282656.1	1.1823E-136	PREDICTED: uncharacterized protein LOC100261574 [Vitis vinifera]
trEMBL	tr\|F6HUI1\|F6HUI1_VITVI	4E-137	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58404.1}
TAIR10	AT4G11790.1	3E-33	Pleckstrin homology (PH) domain superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	19688433	19697585	+
GWHAAZE00000002	mRNA	19688433	19697585	+
GWHAAZE00000002	exon	19688433	19688525	+
GWHAAZE00000002	exon	19689444	19689595	+
GWHAAZE00000002	exon	19690276	19690363	+
GWHAAZE00000002	exon	19691022	19691253	+
GWHAAZE00000002	exon	19692818	19692886	+
GWHAAZE00000002	exon	19693875	19693972	+
GWHAAZE00000002	exon	19695706	19695831	+
GWHAAZE00000002	exon	19697457	19697585	+
GWHAAZE00000002	CDS	19688433	19688525	+
GWHAAZE00000002	CDS	19689444	19689595	+
GWHAAZE00000002	CDS	19690276	19690363	+
GWHAAZE00000002	CDS	19691022	19691253	+
GWHAAZE00000002	CDS	19692818	19692886	+
GWHAAZE00000002	CDS	19693875	19693972	+
GWHAAZE00000002	CDS	19695706	19695831	+
GWHAAZE00000002	CDS	19697457	19697585	+

Transcript Sequence
>GWHTAAZE006131 TCGAATCTTGCAATAAACATAAACAATAATAATATGAAAGGGACGAAACGGTTCGGTGCAACTGACTCGAATCCTATCACCGGCGATGTGGCTTTCCAGAGTAAGCGAGTAATGTTAGGATCCCAGTTTGATTTTCAAAGAGCAGAACCATCTCGACAGCAATCTGTAGAGACTTCACTGTTGGACAATAGGCGGGCTGAATCATCTAGACAGCATGTGAGAGCTCTCAATACCCAATTCGCAAGTTGGGTCCAAACACAATTACAAAATCACCCTGATGAACTTTGGGAAGATGGAGTACAAGACTATCTAACCCACGCCTCAAGCATTATGGAGAAATTTAGTGATGTTGTCAATTGGCTCAAAGCAAATGCAGCAAAATCTGAAAGTTTGTCTGCTGTGGGACCAACCTCTACTCAAAAGAAACCTGTTTCAGAACATAGGGACAACGAGAGGAAATCACTTTCGGAGAATATTAATACTGCTCCTGCTGCTACGACTGGAGGACTTTCAACATCGTGGACCTCGGGGAGTCTCTTTAATAACCAAACCCCTTTTTCATTTGGAATCCAAACTTCAGGAGTACAAAGTCCAAATCTCTTCAAATTGGATGCTTCAAATGATGTTGATGGTGAGGATGATGTCGAGCAGCCTAGCAGCCCATCTGTGAAAAAGAGTGAAGAGAAAGGAGTTATAGTGGTACACGAAGTCAAATGCAAACTTTATGTGAAGTCAAGTAACCCGGGGGACAAAGATGCATGGAAAGATAAAGGCGTGGGCCAGCTATCCATTAAATGTAAAGAGGGTGTCAGCAAGGGCACCAGAGATTCAAAACCAACGATTCTTGTTCGAAATGATGAGGATGGGGGAAATGATGACAGTAACAACGGTAGCCCGGTGGCACAAACATTCTTGATAAGGATGAAGACTGCAGAGGATCGGAATAAGCTAGAATCGGCGATCCAGGAATACGCTCCCAGAGATTGA

Network for GWHGAAZE006123

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14295	NUP50, NPAP60	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.703
	SRR3591706	second leaf	16.256
	SRR3591707	mature leaf	15.826
	SRR3591708	Shoot apex	21.449
	SRR3591709	Stem	17.959
	SRR3591710	White floral bud	29.627
	SRR3591711	White flower	20.090
	SRR3591712	Green floral bud	32.410
	SRR3591713	Yellow flower	20.006
SRP173429	SRR8316895	Juvenile bud stage	12.378
	SRR8316896	Juvenile bud stage	13.618
	SRR8316897	Juvenile bud stage	7.934
	SRR8316894	Third green stage	6.780
	SRR8316900	Third green stage	26.266
	SRR8316901	Third green stage	27.597
	SRR8316898	Complete white stage	15.448
	SRR8316899	Complete white stage	46.667
	SRR8316903	Complete white stage	21.622
	SRR8316902	Silver flowering stage	10.374
	SRR8316904	Silver flowering stage	14.310
	SRR8316905	Silver flowering stage	7.092
	SRR8316906	Gold flowering stage	20.272
	SRR8316907	Gold flowering stage	20.439
	SRR8316908	Gold flowering stage	21.292
SRP132670	SRR6706286	Control	33.811
	SRR6706287	Light intensity 50%	35.637
	SRR6706288	Light intensity 20%	37.330
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.440
	CNS0095593	Slightly white alabastrum(diploid) 2	15.396
	CNS0095594	Slightly white alabastrum(diploid) 3	10.761
	CNS0095595	Whole white alabastrum(diploid) 2	16.022
	CNS0095596	Whole white alabastrum(diploid) 3	9.907
	CNS0095597	Whole white alabastrum(diploid) 4	16.829
	CNS0095598	Silvery flower (diploied) 1	15.950
	CNS0095599	Silvery flower (diploied) 2	15.530
	CNS0095600	Silvery flower (diploied) 3	17.936
	CNS0095601	Golden flower (diploid) 1	14.823
	CNS0095602	Golden flower (diploid) 2	18.078
	CNS0095603	Golden flower (diploid) 3	17.627
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.598
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.487
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.784
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.914
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.477
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.073
	CNS0095610	Silvery flower (tetraploid) 1	19.897
	CNS0095611	Silvery flower (tetraploid) 2	21.749
	CNS0095612	Silvery flower (tetraploid) 3	20.816
	CNS0095613	Golden flower (tetraploid) 1	10.000
	CNS0095614	Golden flower (tetraploid) 2	16.389
	CNS0095615	Golden flower (tetraploid) 3	16.983
CRA001975	CRR073297	Stem 1	23.919
	CRR073298	Stem 2	23.944
	CRR073299	Stem 3	22.225
	CRR073300	Leaf 1	37.350
	CRR073301	Leaf 2	29.375
	CRR073302	Leaf 3	29.859
	CRR073303	Juvenile bud 1	33.350
	CRR073304	Juvenile bud 2	46.102
	CRR073305	Juvenile bud 3	31.807
	CRR073306	Third green 1	14.713
	CRR073307	Third green 2	14.814
	CRR073308	Third green 3	13.820
	CRR073309	Second white 1	12.280
	CRR073310	Second white 2	16.350
	CRR073311	Second white 3	14.626
	CRR073312	Silver flowering 1	10.488
	CRR073313	Silver flowering 2	7.299
	CRR073314	Silver flowering 3	6.703
	CRR073315	Gold flowering 1	5.661
	CRR073316	Gold flowering 2	14.072
	CRR073317	Gold flowering 3	7.988
	CRR073318	Tawny withering 1	15.063
	CRR073319	Tawny withering 2	25.290
	CRR073320	Tawny withering 3	10.808