Detail information of GWHGAAZE006144


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010662544.12.64045E-57PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Vitis vinifera]
Swissprottr|P54873|HMCS_ARATH3E-56Hydroxymethylglutaryl-CoA synthase
trEMBLtr|H9CTV3|H9CTV3_CAMSI2E-573-hydroxy-3-methylglutaryl-CoA synthase {ECO:0000313|EMBL:AFC34137.1}
TAIR10AT4G11820.21E-47hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2001819620020509+
GWHAAZE00000002mRNA2001819620020509+
GWHAAZE00000002exon2001819620018198+
GWHAAZE00000002exon2001879320018899+
GWHAAZE00000002exon2001974620019878+
GWHAAZE00000002exon2002034220020509+
GWHAAZE00000002CDS2001819620018198+
GWHAAZE00000002CDS2001879320018899+
GWHAAZE00000002CDS2001974620019878+
GWHAAZE00000002CDS2002034220020509+
Transcript Sequence

Network for GWHGAAZE006144

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01154.18HMG_CoA_synt_N31021.20E-40
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01641E2.3.3.10 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Butanoate metabolismmap00650
Synthesis and degradation of ketone bodiesmap00072
Valine, leucine and isoleucine degradationmap00280
Terpenoid backbone biosynthesismap00900
PPAR signaling pathwaymap03320

Gene Ontology

GO term OntologyName
GO:0008299biological_processisoprenoid biosynthetic process
GO:0003824molecular_functioncatalytic activity
GO:0004421molecular_functionhydroxymethylglutaryl-CoA synthase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.751
SRR3591706second leaf4.698
SRR3591707mature leaf0.510
SRR3591708Shoot apex8.590
SRR3591709Stem0.552
SRR3591710White floral bud3.421
SRR3591711White flower3.808
SRR3591712Green floral bud6.302
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.211
SRR8316896Juvenile bud stage 3.182
SRR8316897Juvenile bud stage 1.855
SRR8316894Third green stage 0.698
SRR8316900Third green stage 1.654
SRR8316901Third green stage 0.636
SRR8316898Complete white stage 0.157
SRR8316899Complete white stage 1.819
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.146
SRR8316904Silver flowering stage0.200
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.294
SRR8316907Gold flowering stage 0.213
SRR8316908Gold flowering stage 0.271
SRP132670SRR6706286Control0.613
SRR6706287Light intensity 50%3.721
SRR6706288Light intensity 20%4.880
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.243
CNS0095593Slightly white alabastrum(diploid) 22.262
CNS0095594Slightly white alabastrum(diploid) 31.428
CNS0095595Whole white alabastrum(diploid) 21.510
CNS0095596Whole white alabastrum(diploid) 31.781
CNS0095597Whole white alabastrum(diploid) 41.697
CNS0095598Silvery flower (diploied) 11.932
CNS0095599Silvery flower (diploied) 23.706
CNS0095600Silvery flower (diploied) 31.019
CNS0095601Golden flower (diploid) 11.063
CNS0095602Golden flower (diploid) 20.172
CNS0095603Golden flower (diploid) 30.777
CNS0095604Slightly white alabastrum(tetraploid) 12.724
CNS0095605Slightly white alabastrum(tetraploid) 22.883
CNS0095606Slightly white alabastrum(tetraploid) 36.562
CNS0095607Whole white alabastrum(tetraploid) 12.172
CNS0095608Whole white alabastrum(tetraploid) 21.087
CNS0095609Whole white alabastrum(tetraploid) 37.222
CNS0095610Silvery flower (tetraploid) 10.285
CNS0095611Silvery flower (tetraploid) 20.366
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.158
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.456
CRA001975CRR073297Stem 17.304
CRR073298Stem 23.316
CRR073299Stem 37.938
CRR073300Leaf 17.418
CRR073301Leaf 23.397
CRR073302Leaf 39.382
CRR073303Juvenile bud 10.995
CRR073304Juvenile bud 21.448
CRR073305Juvenile bud 33.280
CRR073306Third green 10.209
CRR073307Third green 20.223
CRR073308Third green 30.000
CRR073309Second white 10.162
CRR073310Second white 20.097
CRR073311Second white 31.102
CRR073312Silver flowering 10.115
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.123
CRR073315Gold flowering 10.023
CRR073316Gold flowering 20.363
CRR073317Gold flowering 31.886
CRR073318Tawny withering 12.086
CRR073319Tawny withering 20.259
CRR073320Tawny withering 30.019