Gene detail

Detail information of GWHGAAZE006157

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU39024.1	1.8664E-145	hypothetical protein MIMGU_mgv1a022933mg [Erythranthe guttata]
Swissprot	tr\|Q9LE33\|HPR3_ARATH	2E-123	Glyoxylate/hydroxypyruvate reductase HPR3
trEMBL	tr\|A0A022RGA1\|A0A022RGA1_ERYGU	7E-146	Uncharacterized protein {ECO:0000313\|EMBL:EYU39024.1}
TAIR10	AT1G12550.1	4E-100	D-isomer specific 2-hydroxyacid dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	20280395	20283302	-
GWHAAZE00000002	mRNA	20280395	20283302	-
GWHAAZE00000002	exon	20280395	20280919	-
GWHAAZE00000002	exon	20282838	20283302	-
GWHAAZE00000002	CDS	20282838	20283302	-
GWHAAZE00000002	CDS	20280395	20280919	-

Transcript Sequence
>GWHTAAZE006165 ATGGCTTCCCCTGCCAACCCACAACCTATCGGGTTTCCCGACCCGAAAGATAACCTCCCATTGGTCCTCGTCCACCGCCTTCCCCAATTCGCCACCACCTTCAACCACTGGCTCCAGCCCCACTTCCGCATTCTGGAACCATCCGACCCGTCATTTTCGACCCGGTCTAAAACCGTACGCGCCCTCTTCTGCGTGGGACCCACGCCCGTCAATTCCGAGACGCTGGACCAGTTCCCGTCAGTAGAGTGCGTGGTGGGGTCCAGCGCCGGCATCGACCACATCGACCTCGCCGAGTGCAACCGCCGCCGCGTCATGGTTGCCAACGCCGGCGATGCTTTCTCCGAGGACGTCGCTGATTACGCCGTCGGTCTGTTGATCGACGTTCTTCGTCGGGTCTCCGCCGCCGACCGCTTCGTTCGTGGCGGGTTGTGGGCTGTGAATGGAGAGTATCCTCTGGGCTCTAAGGTGGGGGGAAAGAGGATCGGTATTGTTGGATTGGGAAGTATCGGCTCTATGGTTGCAAAAAGACTCGAGCCCTTTGGCTGCATTATTGCCTACAACTCAAGGAGGAAGAAGCTGAACGTACCATTTACTTATTATTCAAAGGTTCAAGACCTTGCAACTAATAGTGATGCTCTCATCCTTTGTTGTTCGTTGACAAGTGAAACCCGCCACTTAATAAACAAAGATGTGATGATGGCACTGGGAAAGAAAGGTGTTGTTATTAACGTGGGACGAGGGGCTCTCGTGGACGAGAAGGAATTAGTAGAGTTTCTGGTGCAAGGCGAGATTGCTGGGGCCGGACTTGATGTGTTTGAAGATGAACCTAATGTACCAAAAGAGCTATTTGGGTTGGATAATGTTGTTTTGTCTCCCCATAAAGCTGTAACAACCCCAGAATCGATTGAACTATTGCGGAAGGCAATTGTTGGAAACTTGGACGCATTTTTTGCTAATAAGCCTTTGCTATCACAGGTGAAGTTTGAATGA

Network for GWHGAAZE006157

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00389.31	2-Hacid_dh	52	326	1.20E-17
PF02826.20	2-Hacid_dh_C	122	295	6.00E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15919	HPR2_3	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Glycine, serine and threonine metabolism	map00260

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0051287	molecular_function	NAD binding
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.829
	SRR3591706	second leaf	5.599
	SRR3591707	mature leaf	5.757
	SRR3591708	Shoot apex	7.658
	SRR3591709	Stem	19.453
	SRR3591710	White floral bud	8.801
	SRR3591711	White flower	18.104
	SRR3591712	Green floral bud	7.152
	SRR3591713	Yellow flower	10.177
SRP173429	SRR8316895	Juvenile bud stage	4.622
	SRR8316896	Juvenile bud stage	5.931
	SRR8316897	Juvenile bud stage	3.570
	SRR8316894	Third green stage	2.730
	SRR8316900	Third green stage	11.683
	SRR8316901	Third green stage	10.607
	SRR8316898	Complete white stage	7.770
	SRR8316899	Complete white stage	19.575
	SRR8316903	Complete white stage	9.563
	SRR8316902	Silver flowering stage	5.500
	SRR8316904	Silver flowering stage	5.363
	SRR8316905	Silver flowering stage	3.754
	SRR8316906	Gold flowering stage	10.595
	SRR8316907	Gold flowering stage	9.915
	SRR8316908	Gold flowering stage	12.921
SRP132670	SRR6706286	Control	10.608
	SRR6706287	Light intensity 50%	10.247
	SRR6706288	Light intensity 20%	10.980
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.434
	CNS0095593	Slightly white alabastrum(diploid) 2	9.782
	CNS0095594	Slightly white alabastrum(diploid) 3	6.202
	CNS0095595	Whole white alabastrum(diploid) 2	9.132
	CNS0095596	Whole white alabastrum(diploid) 3	7.094
	CNS0095597	Whole white alabastrum(diploid) 4	8.313
	CNS0095598	Silvery flower (diploied) 1	7.850
	CNS0095599	Silvery flower (diploied) 2	7.744
	CNS0095600	Silvery flower (diploied) 3	10.299
	CNS0095601	Golden flower (diploid) 1	7.790
	CNS0095602	Golden flower (diploid) 2	9.800
	CNS0095603	Golden flower (diploid) 3	11.044
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.459
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.250
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.807
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.224
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.942
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.185
	CNS0095610	Silvery flower (tetraploid) 1	9.967
	CNS0095611	Silvery flower (tetraploid) 2	10.893
	CNS0095612	Silvery flower (tetraploid) 3	8.064
	CNS0095613	Golden flower (tetraploid) 1	4.882
	CNS0095614	Golden flower (tetraploid) 2	8.046
	CNS0095615	Golden flower (tetraploid) 3	7.356
CRA001975	CRR073297	Stem 1	7.864
	CRR073298	Stem 2	9.063
	CRR073299	Stem 3	11.691
	CRR073300	Leaf 1	11.701
	CRR073301	Leaf 2	15.026
	CRR073302	Leaf 3	13.891
	CRR073303	Juvenile bud 1	18.525
	CRR073304	Juvenile bud 2	13.243
	CRR073305	Juvenile bud 3	15.184
	CRR073306	Third green 1	9.915
	CRR073307	Third green 2	15.379
	CRR073308	Third green 3	10.326
	CRR073309	Second white 1	8.183
	CRR073310	Second white 2	7.871
	CRR073311	Second white 3	5.941
	CRR073312	Silver flowering 1	2.053
	CRR073313	Silver flowering 2	4.487
	CRR073314	Silver flowering 3	3.332
	CRR073315	Gold flowering 1	6.709
	CRR073316	Gold flowering 2	10.105
	CRR073317	Gold flowering 3	12.228
	CRR073318	Tawny withering 1	15.622
	CRR073319	Tawny withering 2	12.472
	CRR073320	Tawny withering 3	14.048