Detail information of GWHGAAZE006179


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010277386.12.0513E-139PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Nelumbo nucifera]
Swissprottr|Q9XJ36|CLPR2_ARATH4E-129ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic (Precursor)
trEMBLtr|A0A068UNN8|A0A068UNN8_COFCA2E-136ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}
TAIR10AT1G12410.18E-104CLP protease proteolytic subunit 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2063442720639261-
GWHAAZE00000002mRNA2063442720639261-
GWHAAZE00000002exon2063442720634513-
GWHAAZE00000002exon2063475820634871-
GWHAAZE00000002exon2063565420635749-
GWHAAZE00000002exon2063584220635910-
GWHAAZE00000002exon2063659720636713-
GWHAAZE00000002exon2063785720637994-
GWHAAZE00000002exon2063814320638257-
GWHAAZE00000002exon2063886520638937-
GWHAAZE00000002exon2063903620639079-
GWHAAZE00000002exon2063918220639261-
GWHAAZE00000002CDS2063918220639261-
GWHAAZE00000002CDS2063903620639079-
GWHAAZE00000002CDS2063886520638937-
GWHAAZE00000002CDS2063814320638257-
GWHAAZE00000002CDS2063785720637994-
GWHAAZE00000002CDS2063659720636713-
GWHAAZE00000002CDS2063584220635910-
GWHAAZE00000002CDS2063565420635749-
GWHAAZE00000002CDS2063475820634871-
GWHAAZE00000002CDS2063442720634513-
Transcript Sequence

Network for GWHGAAZE006179

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00574.24CLP_protease962713.30E-56
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01358clpP, CLPP Cell cycle - Caulobacter map04112
Longevity regulating pathway - wormmap04212

Gene Ontology

GO term OntologyName
GO:0006508biological_processproteolysis
GO:0004252molecular_functionserine-type endopeptidase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf62.899
SRR3591706second leaf94.236
SRR3591707mature leaf76.893
SRR3591708Shoot apex93.054
SRR3591709Stem42.620
SRR3591710White floral bud79.913
SRR3591711White flower116.406
SRR3591712Green floral bud99.276
SRR3591713Yellow flower133.731
SRP173429 SRR8316895Juvenile bud stage 58.449
SRR8316896Juvenile bud stage 73.019
SRR8316897Juvenile bud stage 35.649
SRR8316894Third green stage 31.054
SRR8316900Third green stage 118.850
SRR8316901Third green stage 99.020
SRR8316898Complete white stage 45.147
SRR8316899Complete white stage 111.915
SRR8316903Complete white stage 62.313
SRR8316902Silver flowering stage52.493
SRR8316904Silver flowering stage63.989
SRR8316905Silver flowering stage31.642
SRR8316906Gold flowering stage 138.890
SRR8316907Gold flowering stage 115.533
SRR8316908Gold flowering stage 147.028
SRP132670SRR6706286Control69.767
SRR6706287Light intensity 50%63.855
SRR6706288Light intensity 20%72.211
CNP0000432CNS0095592Slightly white alabastrum(diploid) 154.841
CNS0095593Slightly white alabastrum(diploid) 248.733
CNS0095594Slightly white alabastrum(diploid) 344.969
CNS0095595Whole white alabastrum(diploid) 253.308
CNS0095596Whole white alabastrum(diploid) 352.187
CNS0095597Whole white alabastrum(diploid) 442.216
CNS0095598Silvery flower (diploied) 163.440
CNS0095599Silvery flower (diploied) 265.997
CNS0095600Silvery flower (diploied) 386.785
CNS0095601Golden flower (diploid) 166.816
CNS0095602Golden flower (diploid) 275.874
CNS0095603Golden flower (diploid) 373.339
CNS0095604Slightly white alabastrum(tetraploid) 151.464
CNS0095605Slightly white alabastrum(tetraploid) 249.434
CNS0095606Slightly white alabastrum(tetraploid) 372.108
CNS0095607Whole white alabastrum(tetraploid) 131.304
CNS0095608Whole white alabastrum(tetraploid) 233.567
CNS0095609Whole white alabastrum(tetraploid) 374.156
CNS0095610Silvery flower (tetraploid) 194.720
CNS0095611Silvery flower (tetraploid) 2108.760
CNS0095612Silvery flower (tetraploid) 3116.594
CNS0095613Golden flower (tetraploid) 183.583
CNS0095614Golden flower (tetraploid) 296.218
CNS0095615Golden flower (tetraploid) 3133.898
CRA001975CRR073297Stem 173.058
CRR073298Stem 261.932
CRR073299Stem 382.617
CRR073300Leaf 168.742
CRR073301Leaf 269.415
CRR073302Leaf 392.365
CRR073303Juvenile bud 193.892
CRR073304Juvenile bud 295.246
CRR073305Juvenile bud 371.563
CRR073306Third green 163.501
CRR073307Third green 239.545
CRR073308Third green 347.927
CRR073309Second white 1122.279
CRR073310Second white 2110.860
CRR073311Second white 379.448
CRR073312Silver flowering 184.121
CRR073313Silver flowering 287.011
CRR073314Silver flowering 366.031
CRR073315Gold flowering 1161.852
CRR073316Gold flowering 2150.958
CRR073317Gold flowering 3109.495
CRR073318Tawny withering 145.892
CRR073319Tawny withering 244.556
CRR073320Tawny withering 347.766