Gene detail

Detail information of GWHGAAZE006182

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011081107.1	0	PREDICTED: methylsterol monooxygenase 1-1-like [Sesamum indicum]
Swissprot	tr\|Q8L7W5\|SMO11_ARATH	4E-170	Methylsterol monooxygenase 1-1
trEMBL	tr\|A0A067JRW8\|A0A067JRW8_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP25588.1}
TAIR10	AT4G12110.1	8E-124	sterol-4alpha-methyl oxidase 1-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	20713016	20719025	+
GWHAAZE00000002	mRNA	20713016	20719025	+
GWHAAZE00000002	exon	20713016	20713526	+
GWHAAZE00000002	exon	20713803	20713909	+
GWHAAZE00000002	exon	20714069	20714284	+
GWHAAZE00000002	exon	20717063	20717210	+
GWHAAZE00000002	exon	20717308	20717340	+
GWHAAZE00000002	exon	20718594	20719025	+
GWHAAZE00000002	five_prime_UTR	20713016	20713199	+
GWHAAZE00000002	CDS	20713200	20713526	+
GWHAAZE00000002	CDS	20713803	20713909	+
GWHAAZE00000002	CDS	20714069	20714284	+
GWHAAZE00000002	CDS	20717063	20717210	+
GWHAAZE00000002	CDS	20717308	20717340	+
GWHAAZE00000002	CDS	20718594	20718674	+
GWHAAZE00000002	three_prime_UTR	20718675	20719025	+

Transcript Sequence
>GWHTAAZE006190 ACACCTTGCACTCTCTAGCCCTCTGCCTTTTGTTTCTTTCCCGCAAATATTATTATTTTAACAACCTGACAATCCCAGATTCCCCCTTCCTTCAAATACATGTACACTCCATTCGTTCAATTCCTCCTCCTCCTCCGCTTCACTCAGTCCCCCATTCCCACCGCCCTCTACCTCTGCCCCGCCAATGTTGCCCTACACAACCTTAATTGAGGCAGAAACCGGCCTAGGCCGCCCCCTCACGGCGGCCGAAACCCTCTGGTTCAACTACTCGGCTACCAAGTCGGATTACTTCCTCTACTGTCACAACATTCTCTTCCTTTTCCTCATCTTCTCTGTCTTCCCCCTCGTATACGTTTTTATAGAACTCGTATACTCCAACATCCACAGATACAAAATCCAACCTAAAGTCAAGCTCTCTTATTCCGATACCTTCCGTTGTTACCGAGACGTAATGCGCATGTTCATCCTCGTCGTTGGCCCTCTCCAGCTCCTCTCTTACCCTTCAATCAAATTGATTGGGATCCGTTCGAGCTTGCCCTTGCCGTCGATATACGAGATTGTCGCTCAATTGGCTGTGTATTTCATCGTTGAGGACTACACCAACTACTGGATCCACAGGTTTCTGCATTGCAAATGGGGTTACGAGAAGATTCATAAAGTTCACCATGAGTACTCGGCGCCGATTGGGTTTGCGGCTCCGTACGCCCACTGGGCGGAGGTTCTGATCCTCGGGATTCCTTCGGCTCTGGGCCCCGCCATGGTCCCCGGTCACATGATTACCTTCTGGTTGTGGATTGCTTTGAGGCAGATTGAGGCAATTGAGACTCACAGTGGGTACGACATTCCTTGGACTCCCACAAAATACATCCCATTTTATGGTGGCGCAGATTACCATGATTATCATCATTACGTAGGCGGACAGAGCCAGAGCAACTTTGCTTCTGTCTTCACCTACTGTGATTACATATATGGAACTGACAAGGGCTACCGGTACCAAAAGAAACTCCTTCGGCAGCTGAAAGAGGGATTGGAAAGCAACGGCAACCAAAATGGAGGCTCATACAACATCTCTGGTCAAGATCTTAAATCAGAGTAGCTTGAATTTTCCGGTATGCTTCTCAGCCGCGACAAAACAGTCCTTTTCAAATTGCACCATCTTTTGTTTGGCGCTATGCTGGTTTGGTAGAACAGAAGATAGTCCTACTGGTTCAGTTGGAGATTAACTAGGGGTTTTTTCTAAAACTTTTATCATGTGTAGTTTGGGAAAATGATTTTAAATAGTCAGTGTGAATGTTTTCGAACCTGAAGAACTTCTGTTACTTTTGCAGTTTGTTCGAATGAAACTCTTATATATCGTGTTGAATTTTGTTGTGTAGCTCTAGGACTTGTATAATATAGATGTATCTTCTCAGTTGTTTCTGAATATAATTGATTTCATGTTATCAAT

Network for GWHGAAZE006182

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04116.14	FA_hydroxylase	130	264	6.60E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14423	SMO1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100

Gene Ontology

GO term	Ontology	Name
GO:0008610	biological_process	lipid biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.340
	SRR3591706	second leaf	30.321
	SRR3591707	mature leaf	28.989
	SRR3591708	Shoot apex	38.928
	SRR3591709	Stem	33.791
	SRR3591710	White floral bud	19.528
	SRR3591711	White flower	19.198
	SRR3591712	Green floral bud	36.092
	SRR3591713	Yellow flower	12.893
SRP173429	SRR8316895	Juvenile bud stage	29.327
	SRR8316896	Juvenile bud stage	47.682
	SRR8316897	Juvenile bud stage	22.215
	SRR8316894	Third green stage	17.443
	SRR8316900	Third green stage	42.721
	SRR8316901	Third green stage	41.240
	SRR8316898	Complete white stage	8.231
	SRR8316899	Complete white stage	40.988
	SRR8316903	Complete white stage	21.355
	SRR8316902	Silver flowering stage	2.097
	SRR8316904	Silver flowering stage	2.241
	SRR8316905	Silver flowering stage	1.601
	SRR8316906	Gold flowering stage	5.112
	SRR8316907	Gold flowering stage	5.417
	SRR8316908	Gold flowering stage	8.509
SRP132670	SRR6706286	Control	31.950
	SRR6706287	Light intensity 50%	32.352
	SRR6706288	Light intensity 20%	31.710
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	57.061
	CNS0095593	Slightly white alabastrum(diploid) 2	51.619
	CNS0095594	Slightly white alabastrum(diploid) 3	51.499
	CNS0095595	Whole white alabastrum(diploid) 2	42.134
	CNS0095596	Whole white alabastrum(diploid) 3	47.389
	CNS0095597	Whole white alabastrum(diploid) 4	37.794
	CNS0095598	Silvery flower (diploied) 1	28.792
	CNS0095599	Silvery flower (diploied) 2	23.573
	CNS0095600	Silvery flower (diploied) 3	21.151
	CNS0095601	Golden flower (diploid) 1	21.133
	CNS0095602	Golden flower (diploid) 2	29.016
	CNS0095603	Golden flower (diploid) 3	28.033
	CNS0095604	Slightly white alabastrum(tetraploid) 1	46.732
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.572
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.684
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.159
	CNS0095608	Whole white alabastrum(tetraploid) 2	32.419
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.067
	CNS0095610	Silvery flower (tetraploid) 1	12.601
	CNS0095611	Silvery flower (tetraploid) 2	12.282
	CNS0095612	Silvery flower (tetraploid) 3	10.658
	CNS0095613	Golden flower (tetraploid) 1	9.117
	CNS0095614	Golden flower (tetraploid) 2	18.042
	CNS0095615	Golden flower (tetraploid) 3	6.991
CRA001975	CRR073297	Stem 1	50.177
	CRR073298	Stem 2	51.307
	CRR073299	Stem 3	77.267
	CRR073300	Leaf 1	56.904
	CRR073301	Leaf 2	65.589
	CRR073302	Leaf 3	63.901
	CRR073303	Juvenile bud 1	62.885
	CRR073304	Juvenile bud 2	43.056
	CRR073305	Juvenile bud 3	77.248
	CRR073306	Third green 1	6.182
	CRR073307	Third green 2	7.619
	CRR073308	Third green 3	9.611
	CRR073309	Second white 1	4.559
	CRR073310	Second white 2	5.318
	CRR073311	Second white 3	5.000
	CRR073312	Silver flowering 1	5.914
	CRR073313	Silver flowering 2	7.102
	CRR073314	Silver flowering 3	7.491
	CRR073315	Gold flowering 1	51.514
	CRR073316	Gold flowering 2	67.083
	CRR073317	Gold flowering 3	69.965
	CRR073318	Tawny withering 1	167.481
	CRR073319	Tawny withering 2	98.782
	CRR073320	Tawny withering 3	198.214