Detail information of GWHGAAZE006191


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006445275.10hypothetical protein CICLE_v10020187mg [Citrus clementina]
Swissprottr|O81312|GAE3_ARATH0UDP-glucuronate 4-epimerase 3
trEMBLtr|A0A067HDB8|A0A067HDB8_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO85806.1}
TAIR10AT4G00110.15E-165UDP-D-glucuronate 4-epimerase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2086941520871469-
GWHAAZE00000002mRNA2086941520871469-
GWHAAZE00000002exon2087096320871469-
GWHAAZE00000002exon2087082120870865-
GWHAAZE00000002exon2086941520870744-
GWHAAZE00000002five_prime_UTR2087136420871469-
GWHAAZE00000002CDS2087096320871363-
GWHAAZE00000002CDS2087082120870865-
GWHAAZE00000002CDS2086982020870744-
GWHAAZE00000002three_prime_UTR2086941520869819-
Transcript Sequence

Network for GWHGAAZE006191

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01370.22Epimerase1023542.00E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08679E5.1.3.6 Metabolic pathways map01100
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity
GO:0050662molecular_functioncoenzyme binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf46.577
SRR3591706second leaf29.222
SRR3591707mature leaf21.671
SRR3591708Shoot apex23.295
SRR3591709Stem72.988
SRR3591710White floral bud14.671
SRR3591711White flower32.908
SRR3591712Green floral bud16.028
SRR3591713Yellow flower46.929
SRP173429 SRR8316895Juvenile bud stage 17.428
SRR8316896Juvenile bud stage 23.699
SRR8316897Juvenile bud stage 8.409
SRR8316894Third green stage 7.675
SRR8316900Third green stage 19.761
SRR8316901Third green stage 15.584
SRR8316898Complete white stage 4.793
SRR8316899Complete white stage 23.569
SRR8316903Complete white stage 13.535
SRR8316902Silver flowering stage9.668
SRR8316904Silver flowering stage14.335
SRR8316905Silver flowering stage6.420
SRR8316906Gold flowering stage 23.331
SRR8316907Gold flowering stage 25.674
SRR8316908Gold flowering stage 28.086
SRP132670SRR6706286Control19.088
SRR6706287Light intensity 50%16.194
SRR6706288Light intensity 20%15.963
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.087
CNS0095593Slightly white alabastrum(diploid) 213.855
CNS0095594Slightly white alabastrum(diploid) 315.919
CNS0095595Whole white alabastrum(diploid) 211.412
CNS0095596Whole white alabastrum(diploid) 38.035
CNS0095597Whole white alabastrum(diploid) 49.623
CNS0095598Silvery flower (diploied) 124.415
CNS0095599Silvery flower (diploied) 217.451
CNS0095600Silvery flower (diploied) 328.733
CNS0095601Golden flower (diploid) 122.437
CNS0095602Golden flower (diploid) 239.375
CNS0095603Golden flower (diploid) 336.408
CNS0095604Slightly white alabastrum(tetraploid) 116.818
CNS0095605Slightly white alabastrum(tetraploid) 213.247
CNS0095606Slightly white alabastrum(tetraploid) 328.649
CNS0095607Whole white alabastrum(tetraploid) 112.419
CNS0095608Whole white alabastrum(tetraploid) 27.589
CNS0095609Whole white alabastrum(tetraploid) 315.353
CNS0095610Silvery flower (tetraploid) 129.334
CNS0095611Silvery flower (tetraploid) 232.674
CNS0095612Silvery flower (tetraploid) 325.497
CNS0095613Golden flower (tetraploid) 121.508
CNS0095614Golden flower (tetraploid) 227.800
CNS0095615Golden flower (tetraploid) 335.599
CRA001975CRR073297Stem 117.075
CRR073298Stem 216.711
CRR073299Stem 320.249
CRR073300Leaf 112.922
CRR073301Leaf 214.796
CRR073302Leaf 312.591
CRR073303Juvenile bud 110.801
CRR073304Juvenile bud 210.514
CRR073305Juvenile bud 317.658
CRR073306Third green 14.797
CRR073307Third green 24.172
CRR073308Third green 35.659
CRR073309Second white 121.801
CRR073310Second white 29.987
CRR073311Second white 317.162
CRR073312Silver flowering 131.142
CRR073313Silver flowering 237.057
CRR073314Silver flowering 324.984
CRR073315Gold flowering 127.047
CRR073316Gold flowering 234.103
CRR073317Gold flowering 336.342
CRR073318Tawny withering 121.678
CRR073319Tawny withering 217.966
CRR073320Tawny withering 323.217