Detail information of GWHGAAZE006201


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAAF22256.15.7153E-137myb-related transcription factor [Spuriopimpinella brachycarpa]
Swissprottr|Q50EX6|ODO1_PETHY4E-108Protein ODORANT1
trEMBLtr|Q9SEC4|Q9SEC4_PIMBR2E-137Myb-related transcription factor {ECO:0000313|EMBL:AAF22256.1}
TAIR10AT4G22680.15E-81myb domain protein 85

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2097161320973275-
GWHAAZE00000002mRNA2097161320973275-
GWHAAZE00000002exon2097161320972162-
GWHAAZE00000002exon2097301320973275-
GWHAAZE00000002CDS2097301320973275-
GWHAAZE00000002CDS2097161320972162-
Transcript Sequence

Network for GWHGAAZE006201

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding14612.80E-13
PF00249.32Myb_DNA-binding711116.50E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.970
SRR3591706second leaf3.238
SRR3591707mature leaf3.796
SRR3591708Shoot apex3.045
SRR3591709Stem101.139
SRR3591710White floral bud0.233
SRR3591711White flower0.462
SRR3591712Green floral bud1.400
SRR3591713Yellow flower1.554
SRP173429 SRR8316895Juvenile bud stage 9.954
SRR8316896Juvenile bud stage 5.804
SRR8316897Juvenile bud stage 1.693
SRR8316894Third green stage 0.675
SRR8316900Third green stage 1.785
SRR8316901Third green stage 1.288
SRR8316898Complete white stage 0.262
SRR8316899Complete white stage 0.620
SRR8316903Complete white stage 0.198
SRR8316902Silver flowering stage0.216
SRR8316904Silver flowering stage0.184
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 1.185
SRR8316907Gold flowering stage 0.163
SRR8316908Gold flowering stage 1.710
SRP132670SRR6706286Control1.782
SRR6706287Light intensity 50%0.830
SRR6706288Light intensity 20%0.817
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.998
CNS0095593Slightly white alabastrum(diploid) 21.106
CNS0095594Slightly white alabastrum(diploid) 30.554
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.307
CNS0095597Whole white alabastrum(diploid) 40.080
CNS0095598Silvery flower (diploied) 10.070
CNS0095599Silvery flower (diploied) 20.053
CNS0095600Silvery flower (diploied) 30.423
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.504
CNS0095603Golden flower (diploid) 30.947
CNS0095604Slightly white alabastrum(tetraploid) 10.559
CNS0095605Slightly white alabastrum(tetraploid) 20.309
CNS0095606Slightly white alabastrum(tetraploid) 35.027
CNS0095607Whole white alabastrum(tetraploid) 10.100
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 31.655
CNS0095610Silvery flower (tetraploid) 10.361
CNS0095611Silvery flower (tetraploid) 20.095
CNS0095612Silvery flower (tetraploid) 30.028
CNS0095613Golden flower (tetraploid) 10.185
CNS0095614Golden flower (tetraploid) 20.473
CNS0095615Golden flower (tetraploid) 30.346
CRA001975CRR073297Stem 119.190
CRR073298Stem 29.660
CRR073299Stem 36.967
CRR073300Leaf 12.164
CRR073301Leaf 21.064
CRR073302Leaf 34.082
CRR073303Juvenile bud 10.328
CRR073304Juvenile bud 20.092
CRR073305Juvenile bud 32.531
CRR073306Third green 10.052
CRR073307Third green 20.000
CRR073308Third green 30.096
CRR073309Second white 10.000
CRR073310Second white 20.469
CRR073311Second white 30.130
CRR073312Silver flowering 10.717
CRR073313Silver flowering 20.065
CRR073314Silver flowering 30.206
CRR073315Gold flowering 10.896
CRR073316Gold flowering 20.322
CRR073317Gold flowering 31.280
CRR073318Tawny withering 115.371
CRR073319Tawny withering 27.232
CRR073320Tawny withering 316.912