Gene detail

Detail information of GWHGAAZE006207

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001291333.1	0	vacuolar-processing enzyme precursor [Sesamum indicum]
Swissprot	tr\|P49042\|VPE_RICCO	0	Vacuolar-processing enzyme (Precursor)
trEMBL	tr\|Q9LLQ4\|Q9LLQ4_SESIN	0	Asparaginyl endopeptidase {ECO:0000313\|EMBL:AAF89679.1}
TAIR10	AT1G62710.1	3E-179	beta vacuolar processing enzyme

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	21068757	21075418	+
GWHAAZE00000002	mRNA	21068757	21075418	+
GWHAAZE00000002	exon	21068757	21069004	+
GWHAAZE00000002	exon	21071431	21071595	+
GWHAAZE00000002	exon	21072961	21073117	+
GWHAAZE00000002	exon	21073377	21073462	+
GWHAAZE00000002	exon	21073534	21073733	+
GWHAAZE00000002	exon	21074139	21074427	+
GWHAAZE00000002	exon	21074561	21074767	+
GWHAAZE00000002	exon	21075236	21075418	+
GWHAAZE00000002	five_prime_UTR	21068757	21068800	+
GWHAAZE00000002	CDS	21068801	21069004	+
GWHAAZE00000002	CDS	21071431	21071595	+
GWHAAZE00000002	CDS	21072961	21073117	+
GWHAAZE00000002	CDS	21073377	21073462	+
GWHAAZE00000002	CDS	21073534	21073733	+
GWHAAZE00000002	CDS	21074139	21074427	+
GWHAAZE00000002	CDS	21074561	21074767	+
GWHAAZE00000002	CDS	21075236	21075418	+

Transcript Sequence
>GWHTAAZE006215 GACTTTGTTTGCGGTTTTGTGGTGACCCGGTTCAGGCAGGCTAAATGAAGACTTATAGGTTTGTGTTCCGGCTGATCACCTTGCTGCTGGTACTCCTACTCACTAGTTTAAGAGGCGGTGTAGCCGGTTCGCTTAGGCGGTGGGACCCGTTGATCCGGACACCCGTGGAGGAAGAGGAGGAGGAAAATGTGACGAAATGGGCGGTTCTTGTCGCCGGTTCTAAAGGCTACGGAAATTATAGGCATCAAGCAGATGTTTGTCATGCCTACCAAATACTAAAGAAAGGAGGATTGAAAGATGAGAACATAGTGGTGTTCATGTACGATGACATTGCCACTAATGATTTGAATCCAAGGCCTGGTGTTGTAATCAACCATCCCAATGGTTCTGATGTCTATGCTGGTGTTCCTAAGGATTACACTGGCTCAAACGTGACTGCAGAAAATTTATATGCTGTGCTCCTTGGCAATAAAAATGCAGTGAAGGGCGGAAGCAGGAAGGTGGTGGATAGCAAACCCAATGATAGGATATTTCTTTATTACTCAGATCATGGAGGCCCTGGGGTCCTTGGGATGCCCAATATGCCCTTCATTTATGCTAACGAATTCATTGAGGTCTTGAAAAAGAAGCACGCATCGGGCACTTACAATGAGATGGTTTTATACATCGAAGCATGTGAAAGTGGGAGTGTCTTTGAAGGTTTGATGCCTAAAGATTTAAATGTTTACGTCACGACTGCATCAAACGCAGAAGAGAGTAGCTGGGGAACGTACTGCCCCGGGATGGAACCTTCTCCACCTCCCGAGTATATAACTTGCTTGGGCGATTTGTATAGTGTTGCTTGGATGGAAGACAGATTTATTTTGTACTTTTTTTTTGATCTAATATGCGTTTTTGCAAATGGTAAGATTAAAGATGTAATTAACTCCTTTCAGGTGAAGGATAGGACTTCGAACTACAACAGTTATAATGCAGGATCTCATGTGATGGAATATGGGAGTACATATTTCAAGGACGAGAGGCTTTCCTTGTATCAAGGCTTCGATCCAGCTACTGAAAATTTTCCTCCTAACAAAATTCACTTCGATAAACATATGGAGGTCGTTAACCAAAGAGATGCTGATCTTCTCTTCATGTGGCACAGCTACAAGAGATCCGATGATGGTTCAGACAAGAAGGCTGAAATTCTAAGGGAGATAACGGAGACAATGAGACACAGAATGCACTTGGATGCTAGTGTGAACACCATCGGAGTGTTTTTATTTGGTCCCACAAAGAGTTCATCCGTCCTCTCTTCTGTTAGAAACTCGGGTTTACCTCTCGTTGATGACTGGAGATGCCTTAAAGCTATGGTGCACGTGTTTGAGACATATTGCGGGTCACTAACACAGTACGGGATGAAACACATGCGAGCGTTTGCCAACATTTGCAACAAAGGCATCTCAGAGGCTGAGATGGAGAAAGCGTGCGTGGCGGCGTGCAGTAGCCATAACCTGGGGGAGTGGAGTTTTTCAAAGGGACGATATAGTGCTTGA

Network for GWHGAAZE006207

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01650.19	Peptidase_C13	51	331	9.20E-99

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01369	LGMN	Lysosome	map04142
K01369	LGMN	Antigen processing and presentation	map04612

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008233	molecular_function	peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.521
	SRR3591706	second leaf	0.767
	SRR3591707	mature leaf	4.106
	SRR3591708	Shoot apex	1.101
	SRR3591709	Stem	11.151
	SRR3591710	White floral bud	9.556
	SRR3591711	White flower	6.151
	SRR3591712	Green floral bud	1.410
	SRR3591713	Yellow flower	0.722
SRP173429	SRR8316895	Juvenile bud stage	2.350
	SRR8316896	Juvenile bud stage	7.935
	SRR8316897	Juvenile bud stage	1.295
	SRR8316894	Third green stage	2.683
	SRR8316900	Third green stage	0.612
	SRR8316901	Third green stage	1.216
	SRR8316898	Complete white stage	0.133
	SRR8316899	Complete white stage	4.945
	SRR8316903	Complete white stage	2.611
	SRR8316902	Silver flowering stage	0.048
	SRR8316904	Silver flowering stage	0.166
	SRR8316905	Silver flowering stage	0.076
	SRR8316906	Gold flowering stage	0.373
	SRR8316907	Gold flowering stage	0.557
	SRR8316908	Gold flowering stage	0.257
SRP132670	SRR6706286	Control	2.565
	SRR6706287	Light intensity 50%	2.371
	SRR6706288	Light intensity 20%	1.400
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.586
	CNS0095593	Slightly white alabastrum(diploid) 2	0.702
	CNS0095594	Slightly white alabastrum(diploid) 3	2.536
	CNS0095595	Whole white alabastrum(diploid) 2	1.143
	CNS0095596	Whole white alabastrum(diploid) 3	0.255
	CNS0095597	Whole white alabastrum(diploid) 4	1.732
	CNS0095598	Silvery flower (diploied) 1	8.909
	CNS0095599	Silvery flower (diploied) 2	2.481
	CNS0095600	Silvery flower (diploied) 3	2.741
	CNS0095601	Golden flower (diploid) 1	7.225
	CNS0095602	Golden flower (diploid) 2	8.304
	CNS0095603	Golden flower (diploid) 3	7.477
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.748
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.145
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.792
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.419
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.715
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.946
	CNS0095610	Silvery flower (tetraploid) 1	0.141
	CNS0095611	Silvery flower (tetraploid) 2	5.649
	CNS0095612	Silvery flower (tetraploid) 3	1.263
	CNS0095613	Golden flower (tetraploid) 1	0.249
	CNS0095614	Golden flower (tetraploid) 2	0.288
	CNS0095615	Golden flower (tetraploid) 3	0.134
CRA001975	CRR073297	Stem 1	2.147
	CRR073298	Stem 2	4.832
	CRR073299	Stem 3	3.992
	CRR073300	Leaf 1	0.044
	CRR073301	Leaf 2	0.079
	CRR073302	Leaf 3	0.027
	CRR073303	Juvenile bud 1	0.053
	CRR073304	Juvenile bud 2	0.239
	CRR073305	Juvenile bud 3	0.298
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.022
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.061
	CRR073313	Silver flowering 2	0.253
	CRR073314	Silver flowering 3	0.034
	CRR073315	Gold flowering 1	2.578
	CRR073316	Gold flowering 2	4.644
	CRR073317	Gold flowering 3	3.268
	CRR073318	Tawny withering 1	6.023
	CRR073319	Tawny withering 2	3.506
	CRR073320	Tawny withering 3	8.584