Detail information of GWHGAAZE006230


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008238556.11.6051E-139PREDICTED: scarecrow-like protein 27 [Prunus mume]
Swissprottr|Q7XJM8|SCL27_ARATH4E-85Scarecrow-like protein 27
trEMBLtr|M5WE33|M5WE33_PRUPE8E-140Uncharacterized protein {ECO:0000313|EMBL:EMJ11561.1}
TAIR10AT2G45160.13E-60GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2156444821565338+
GWHAAZE00000002mRNA2156444821565338+
GWHAAZE00000002exon2156444821565338+
GWHAAZE00000002CDS2156444821565338+
Transcript Sequence

Network for GWHGAAZE006230

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS52956.40E-71
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.691
SRR3591706second leaf41.351
SRR3591707mature leaf50.693
SRR3591708Shoot apex30.980
SRR3591709Stem43.825
SRR3591710White floral bud29.948
SRR3591711White flower33.706
SRR3591712Green floral bud23.466
SRR3591713Yellow flower15.217
SRP173429 SRR8316895Juvenile bud stage 7.475
SRR8316896Juvenile bud stage 7.545
SRR8316897Juvenile bud stage 2.175
SRR8316894Third green stage 5.147
SRR8316900Third green stage 8.178
SRR8316901Third green stage 9.036
SRR8316898Complete white stage 7.748
SRR8316899Complete white stage 16.244
SRR8316903Complete white stage 15.895
SRR8316902Silver flowering stage6.846
SRR8316904Silver flowering stage7.847
SRR8316905Silver flowering stage4.098
SRR8316906Gold flowering stage 9.540
SRR8316907Gold flowering stage 14.378
SRR8316908Gold flowering stage 20.095
SRP132670SRR6706286Control15.607
SRR6706287Light intensity 50%12.968
SRR6706288Light intensity 20%12.680
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.265
CNS0095593Slightly white alabastrum(diploid) 219.793
CNS0095594Slightly white alabastrum(diploid) 312.798
CNS0095595Whole white alabastrum(diploid) 218.235
CNS0095596Whole white alabastrum(diploid) 311.783
CNS0095597Whole white alabastrum(diploid) 413.669
CNS0095598Silvery flower (diploied) 124.171
CNS0095599Silvery flower (diploied) 219.300
CNS0095600Silvery flower (diploied) 320.749
CNS0095601Golden flower (diploid) 114.636
CNS0095602Golden flower (diploid) 223.318
CNS0095603Golden flower (diploid) 322.768
CNS0095604Slightly white alabastrum(tetraploid) 114.941
CNS0095605Slightly white alabastrum(tetraploid) 214.800
CNS0095606Slightly white alabastrum(tetraploid) 327.066
CNS0095607Whole white alabastrum(tetraploid) 118.046
CNS0095608Whole white alabastrum(tetraploid) 27.633
CNS0095609Whole white alabastrum(tetraploid) 36.048
CNS0095610Silvery flower (tetraploid) 116.801
CNS0095611Silvery flower (tetraploid) 220.602
CNS0095612Silvery flower (tetraploid) 329.230
CNS0095613Golden flower (tetraploid) 110.692
CNS0095614Golden flower (tetraploid) 217.948
CNS0095615Golden flower (tetraploid) 315.073
CRA001975CRR073297Stem 126.046
CRR073298Stem 218.596
CRR073299Stem 329.824
CRR073300Leaf 120.708
CRR073301Leaf 224.444
CRR073302Leaf 313.628
CRR073303Juvenile bud 123.573
CRR073304Juvenile bud 211.282
CRR073305Juvenile bud 343.886
CRR073306Third green 116.630
CRR073307Third green 229.282
CRR073308Third green 331.676
CRR073309Second white 116.430
CRR073310Second white 212.533
CRR073311Second white 310.663
CRR073312Silver flowering 18.707
CRR073313Silver flowering 29.727
CRR073314Silver flowering 39.442
CRR073315Gold flowering 160.094
CRR073316Gold flowering 261.882
CRR073317Gold flowering 354.642
CRR073318Tawny withering 160.802
CRR073319Tawny withering 246.339
CRR073320Tawny withering 363.701