Detail information of GWHGAAZE006264


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009618098.16.0749E-122PREDICTED: 60S ribosomal protein L15-like [Nicotiana tomentosiformis]
Swissprottr|O82528|RL15_PETHY3E-11960S ribosomal protein L15
trEMBLtr|B9GPA1|B9GPA1_POPTR2E-121Ribosomal protein L15 {ECO:0000256|RuleBase:RU000663}
TAIR10AT4G16720.13E-80Ribosomal protein L23/L15e family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2218523422187498-
GWHAAZE00000002mRNA2218523422187498-
GWHAAZE00000002exon2218738222187498-
GWHAAZE00000002exon2218613922186336-
GWHAAZE00000002exon2218523422185479-
GWHAAZE00000002CDS2218738222187498-
GWHAAZE00000002CDS2218613922186336-
GWHAAZE00000002CDS2218523422185479-
Transcript Sequence

Network for GWHGAAZE006264

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00827.18Ribosomal_L15e11725.30E-83
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02877RP-L15e, RPL15 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf682.110
SRR3591706second leaf312.061
SRR3591707mature leaf188.002
SRR3591708Shoot apex797.560
SRR3591709Stem373.450
SRR3591710White floral bud332.828
SRR3591711White flower409.895
SRR3591712Green floral bud536.335
SRR3591713Yellow flower304.938
SRP173429 SRR8316895Juvenile bud stage 454.527
SRR8316896Juvenile bud stage 659.925
SRR8316897Juvenile bud stage 334.599
SRR8316894Third green stage 255.529
SRR8316900Third green stage 891.725
SRR8316901Third green stage 841.974
SRR8316898Complete white stage 217.116
SRR8316899Complete white stage 809.756
SRR8316903Complete white stage 277.333
SRR8316902Silver flowering stage172.961
SRR8316904Silver flowering stage162.264
SRR8316905Silver flowering stage92.268
SRR8316906Gold flowering stage 318.984
SRR8316907Gold flowering stage 339.687
SRR8316908Gold flowering stage 420.824
SRP132670SRR6706286Control656.691
SRR6706287Light intensity 50%662.143
SRR6706288Light intensity 20%706.214
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1760.422
CNS0095593Slightly white alabastrum(diploid) 2851.926
CNS0095594Slightly white alabastrum(diploid) 3691.338
CNS0095595Whole white alabastrum(diploid) 2662.724
CNS0095596Whole white alabastrum(diploid) 3793.569
CNS0095597Whole white alabastrum(diploid) 4492.807
CNS0095598Silvery flower (diploied) 1440.827
CNS0095599Silvery flower (diploied) 2453.359
CNS0095600Silvery flower (diploied) 3374.413
CNS0095601Golden flower (diploid) 1371.132
CNS0095602Golden flower (diploid) 2333.427
CNS0095603Golden flower (diploid) 3337.046
CNS0095604Slightly white alabastrum(tetraploid) 1730.962
CNS0095605Slightly white alabastrum(tetraploid) 2697.932
CNS0095606Slightly white alabastrum(tetraploid) 3920.316
CNS0095607Whole white alabastrum(tetraploid) 1398.816
CNS0095608Whole white alabastrum(tetraploid) 2347.578
CNS0095609Whole white alabastrum(tetraploid) 3724.252
CNS0095610Silvery flower (tetraploid) 1367.380
CNS0095611Silvery flower (tetraploid) 2305.493
CNS0095612Silvery flower (tetraploid) 3244.742
CNS0095613Golden flower (tetraploid) 1223.066
CNS0095614Golden flower (tetraploid) 2328.379
CNS0095615Golden flower (tetraploid) 3192.285
CRA001975CRR073297Stem 1819.554
CRR073298Stem 2854.400
CRR073299Stem 3919.866
CRR073300Leaf 1948.807
CRR073301Leaf 21001.886
CRR073302Leaf 31135.562
CRR073303Juvenile bud 11185.361
CRR073304Juvenile bud 2898.219
CRR073305Juvenile bud 3942.233
CRR073306Third green 1227.080
CRR073307Third green 2236.776
CRR073308Third green 3238.303
CRR073309Second white 1233.530
CRR073310Second white 2170.542
CRR073311Second white 3107.410
CRR073312Silver flowering 1155.746
CRR073313Silver flowering 2225.981
CRR073314Silver flowering 3189.477
CRR073315Gold flowering 1305.657
CRR073316Gold flowering 2305.325
CRR073317Gold flowering 3296.497
CRR073318Tawny withering 1831.832
CRR073319Tawny withering 2656.545
CRR073320Tawny withering 3817.019